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Marc-André Bombeck
e3342dc19e
The inbound-document store encrypts the raw upload (`inbound_documents.content_encrypted`) because it is sensitive clinical data, but the per-fact staging columns persisted the same class of data in the clear: `extracted_facts.data_json` held the transcribed clinical values (diagnosis text, lab values, medication names, stated codes) and `provenance_json` held the verbatim source span (up to 2000 chars copied straight out of the report). The at-rest guarantee was defeated for staged facts, which persist through PENDING and are retained after the decision. Convert both columns to the AES-256-GCM `*_encrypted` BYTEA convention shared with the note columns, going through the same Bytes codec. The upload and fact-edit paths encrypt on write; the confirm path decrypts at commit time to write into the normal structured stores, so the review-then-confirm flow is unchanged. Reads are fail-closed (a bad key id throws). Register both columns in the encrypted-columns registry and the key-rotation script so a dropped legacy key cannot strand them (the guard test enforces both). Migration 0220 swaps the plaintext JSONB columns for the encrypted BYTEA columns; pre-confirm staged rows are ephemeral and cannot be re-encrypted in SQL, so any left by a pre-release build are dropped rather than retained as plaintext (their parent document keeps its encrypted original).
scripts/
One-shot operator and build scripts. These are not part of the running application — they are run by hand during a deploy, a backfill, or a release, or wired into CI. Recurring work belongs on pg-boss (src/lib/jobs/), not here.
How to run them
pnpm dlx tsx scripts/<file>.ts
Use pnpm dlx tsx, not bare pnpm tsx. The production standalone image strips tsx, so the bare invocation fails inside the container. scripts/ is excluded from the project typecheck.
What lives here
generate-openapi.ts— emitsdocs/api/openapi.yamlfrom the registered Zod schemas (pnpm openapi:generate).check-openapi.ts— compares a freshly generated spec against the committed YAML; CI fails on drift (pnpm openapi:check).check-env.ts— pre-deploy env-var sanity check againstenv-manifest.json(pnpm check-env); wired into CI.assert-deploy.ts— post-deploy/api/versionassertion.rotate-encryption-key.ts— AES-256-GCM key rotation; seedocs/ops/encryption-key-rotation.md.restore-backup.ts— restore an off-host AES-GCM backup from an S3-compatible bucket.repair-intake-anomalies.ts— repair historic medication-ledger defects (duplicate dose-slot rows, implausibletaken_at); dry-run by default, seedocs/ops/intake-repair.md.backfill-rollups.ts,drain-per-sample-cumulative.ts,backfill-mood-note-column.ts— historical data backfills (note: the boot-timerollup-full-backfillqueue handles new accounts automatically; the CLI is the manual fallback).seed-demo.ts+seed-demo-v15.sql— populate a demo tenant.test-notifications.ts— exercise the notification dispatcher + reminder check.fetch-geolite2.sh— download the MaxMind GeoLite2 MMDBs (needs a licence key) beforedocker build.install-hooks.sh— install the local git hooks.generate-sw-version.mjs,print-bundle-report.mjs— service-worker version stamp and bundle-size report.i18n/— locale tooling;__tests__/— tests for the scripts above.
Conventions
See ../CLAUDE.md "Tests and commands" + "Self-hosting gotchas". Operator runbooks that drive these scripts live in ../docs/ops/.