repair-intake-anomalies.ts reports duplicate live rows sharing a slot
anchor and intake rows whose taken time sits implausibly far from their
slot. Dry-run by default; --fix tombstones duplicate losers with the
same precedence the nightly dedup applies and recomputes the affected
compliance rollup days; implausible rows are only listed unless
--tombstone-implausible is passed explicitly. Runbook under docs/ops.
The project licence changes from AGPL-3.0 to the PolyForm Noncommercial
License 1.0.0 for this and future versions: free to use, modify and
self-host for noncommercial purposes; commercial use needs a separate
arrangement. Releases up to and including v1.15.18 were published under
AGPL-3.0 and remain available under that licence. LICENSE carries the
verbatim PolyForm text, and the SPDX identifier is updated in
package.json, the version endpoint, the OpenAPI info block, the image
labels and the README.
Blood-pressure fixtures in the in-target integration suite were copied
from live readings; they are now synthetic with the same in/out split so
every assertion holds. Hard-coded operator hostnames move behind env vars
(DEPLOY_LOGS_URL, HEALTHLOG_PROD_URL), the codex client identifies via
the public repository URL, the OpenAPI servers entry points at a neutral
example host, and remaining workflow, docs and comment references to the
operator's instance or working notes are generalised. The compose
whitelist also gains DEPLOY_WEBHOOK_SECRET, which was missing and made
the deploy webhook unusable on compose installs.
Accept an optional doseWindows array on the schedule create/update routes:
each entry pins an explicit on-time range [start,end] to one of the
schedule's times-of-day, defaulting to the symmetric grace band when
absent. Reject malformed ranges (bad HH:mm, a timeOfDay outside the
schedule, an inverted span) with a 422 so the persisted window can never
feed the band minter a degenerate range.
Regenerates the OpenAPI contract for the additive field (iOS-safe).
Add `POST /api/measurements/bulk-delete` and `POST /api/mood-entries/bulk-delete`,
mirroring the bulk-insert conventions (`withIdempotency`, per-user rate
limit, response envelope). Body is `{ ids: string[] }`, capped at 200.
Soft-delete only, ownership-scoped: a single `updateMany` pins `userId` +
`deletedAt: null` and sets `deletedAt` + bumps `syncVersion`, matching the
single-DELETE iOS tombstone contract. A forged or foreign id is a silent
no-op — the returned `deleted` count reflects owned rows only, never a 404
existence leak.
Side effects fan out efficiently: measurements collapse the deleted rows to
the unique `(type, day)` set before recomputing rollups (one recompute per
type-day, not per row) and invalidate the affected status-insight caches;
mood collapses to the unique day set for its rollup recompute. Both bust the
per-user read caches.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
- Layout PUT accepts version 1 as well as 2 (live iOS client still PUTs
version 1); the serializer normalises to the canonical v2 blob, so a v1
body never 422s. Mirrored in the OpenAPI schema + description; yaml regen.
- Add the Weight tile to the inline tile editor so it can be hidden /
reordered like every other Vitals grid tile.
- Replace the non-transitive Vitals tile-drag comparator with a pure,
total-order rebuild helper (reorder the Vitals subset, substitute it back
into the full list in original-order slots, densify).
- Gated-off section rows keep a disabled eye toggle in the same position
with the gate hint as a caption below the title, so the row never jumps.
- Cap the disclosed Vitals tile list height (max-h-[60vh] scroll,
overscroll-contain) so a tile drag does not fight the page scroll.
- Gate edit mode until the layout GET settles so a save can never flush
defaults over a real saved layout.
- Drop the duplicate top-right "Done" affordance: hide the customize toggle
while editing; the in-card Done / Reset own save and reset.
- Restore focus on enter (edit-card heading) and on close (customize toggle).
Tests: route regression for a version-1 PUT persisting a resolved v2 layout;
unit coverage for the new Vitals rebuild helper (order, non-Vitals stability,
per-tile visibility, no mutation).
Add an additive, optional `sections` array to the persisted insights
layout alongside the existing per-metric `tiles`, with the same
merge/dedupe/dense-order semantics. v1 blobs resolve forward to a valid
v2 layout with every section default-visible; the iOS `tiles` contract is
unchanged and a PUT may omit either array (defaults fill in).
With Websockets Support enabled, NPM already injects the upgrade directives via its conditional connection-upgrade map and sets the standard forwarded headers by default. Re-declaring them in the Advanced block is redundant and the hardcoded Connection "upgrade" can break the proxy host. Keep only the HealthLog-specific 300s read timeout.
openssl rand -base64 24 can emit URI-reserved characters (/, +, =). Since POSTGRES_PASSWORD is interpolated unescaped into DATABASE_URL, such a password breaks the connection URL and blocks boot. Switch every documented example to openssl rand -hex 32 (URL-safe, 256-bit).
Derive a single DoseStatus for the open cycle in buildComplianceDisplay
and surface it as complianceDisplay.currentDose, so the medication card
renders its take-window / overdue presentation from one server authority
instead of re-spelling the window math client-side. Add the field to the
OpenAPI ComplianceDisplay schema and regenerate the spec.
The dashboard compliance tile set scheduled = COUNT(*) of logged intake
rows, so its rate (taken / scheduled) sat at ~100% across every window
regardless of real adherence — every logged row was both numerator and
denominator, and the 7/30/90 windows never diverged.
Anchor scheduled to the canonical recurrence engine's expected-dose count
per day, summed across active medications, so days the schedule expected a
dose the user missed pull the rate down and the windows genuinely diverge
with partial adherence. taken is capped per day at the expected count so a
duplicate log can't push a day above 100%. The response shape stays
{date, scheduled, taken} for the existing chart consumer.
Regenerate the OpenAPI contract for the new expected/missed count fields.
Two identical compliance percentages with no context read as a stuck
display, even when the math is correct (a rolling weekly med on cadence is
~100% on every window by construction; a daily med with full adherence
rounds to ~100% on both 7d and 30d). Render the taken-of-expected count
after each rate (e.g. 100% with 4 / 4 and 100% with 52 / 52) so the two rows
stay distinguishable and trustworthy. Falls back to the bare expected count
when only the denominator is on the wire, and to nothing when neither count
is available.
Thread a per-window taken count onto ComplianceDisplay (short.taken /
long.taken) alongside the existing expectedShort / expectedLong, wire both
through to the shared bars component, and regen the OpenAPI schema.
Add unit tests asserting the windows do not structurally collapse to one
value: a daily med with misses outside the 7-day window scores 7d above 30d,
and a rolling weekly med with a partial-adherence history yields a short rate
above the long rate. Add card-part tests for the count / fallback / no-count
render branches.
Add docs/integrations/data-import.md covering the Apple Health
export.zip path, the generic JSON import schema with the full
MeasurementType enum and canonical units, a worked example, and a
CSV-to-JSON conversion how-to. Fix the Apple Health doc to point at
Settings -> Export & Import instead of a non-existent import page. Extend
the export e2e spec with the import surfaces and the example-download
happy path.
When cycle tracking is on, the cycle ring takes the Strain slot in the
health-scores strip rather than adding a sixth tile: the wellness strip
gains a hideStrain flag the insights page sets from the cycle gate, so
Strain is hidden for cycle accounts and shown unchanged for everyone else.
Fix the oversized vertical gap on the insights overview. The cycle summary
card set data-revealed on the same node that carried wellness-tile-rise,
but the entrance keyframe selector is a descendant combinator, so the
animation never matched and the card stayed at the rise rule's opacity: 0 —
invisible yet still occupying its box. Wrap the card so data-revealed sits
on an ancestor, restoring the entrance and removing the phantom gap.
Move the gated cycle entry directly after Medications (before Insights) in
the sidebar nav instead of appending it at the end, spliced by the
Medications index so the position survives a list reorder.
Add an operator-only password-reset CLI. It runs under plain node in the
production standalone image (which strips tsx) via the in-image pg and
@node-rs/argon2, reusing the app's Argon2id parameters through a shared
.mjs module so a reset hash matches one the app would mint. It matches a
single user by username or email, reads the new password without echoing,
never prints it back, and exits non-zero on zero or multiple matches.
Documented in docs/ops/password-reset.md.
Cut v1.15.0: the private menstrual-cycle vertical. Quick-entry day-log
(period/flow, BBT, mucus, OPK + pregnancy/progesterone tests,
contraception, intercourse, graded symptoms), a calendar + signature
cycle wheel, honest range predictions with confidence + a read-your-body
mode, a BBT chart, phase×vitals + symptom-by-phase insights, opt-in
per-channel reminders, encryption of intent fields, discreet
notifications, a one-tap data purge, and Apple-Health reproductive import
+ health-record export. Predictions run on a deterministic engine the iOS
client mirrors offline.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Add the cycle-native counterpart to the phase×vitals crosstab: for each
logged symptom, where in the cycle it clusters. A pure aggregator tallies
each symptom's occurrences across the phase-labelled days (the same phase
map the calendar uses), surfaces only symptoms logged on at least three
phased days, and reports per-phase counts + the dominant phase + its
share. The insights tab renders it as a proportional phase-hued bar with
the dominant phase named in words (never colour-only), observational and
never causal.
Also correct the phase-crosstab OpenAPI row enum, which had drifted
behind the runtime (mood + glucose channels were missing).
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Close the second-round audit UI cluster:
- Cycle reminders: add the missing notification-event labels so the
period-soon / period-confirm toggles read correctly on the
notifications page, and point to them from cycle settings.
- Per-cycle history: render a recent-cycles list (range, length, period
length, confirmed-ovulation chip) — the cycles were fetched but only
the aggregate stats showed.
- Confirmed ovulation: carry it on the prediction DTO and surface it as a
solid BBT-chart marker + a predictions row + a history chip.
- Log-day sheet: deselecting an enum now clears it (edits route through
the nullable PATCH); period start/end work on any selected date for
retroactive correction; "end period" shows only while one is open.
Extract the payload builders as pure, unit-tested functions.
- Cycle-tracking enable toggle in account settings so any account can opt
in before the gated page is reachable; wire the cycle data-purge button
to the hard-delete route and document the route in the OpenAPI spec.
- Calendar legend: add the symptom dot, render fertile as a ring to match
the grid; tighten the luteal prior bound to the engine clamp; mute the
BBT ovulation-label colour for contrast.
- Share the cycle-start backward-walk between the wheel and the chart.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Finish the cycle web vertical's signature surfaces:
- Rebuild the cycle wheel to the wellness-ring premium signature — a
clockwise clock-wipe that draws the phase arcs on from the 12-o'clock
day-0 origin, a phase-tinted bloom on the active arc, the shared
specular sheen, a day-number count-up, and a soft current-day marker
halo. All on the wellness-tile surface, gated once per session and
zeroed under prefers-reduced-motion.
- Add the basal-body-temperature chart to the predictions tab: the
current-cycle BBT series with phase-tinted points, fertility signs in
the tooltip, and an estimated-ovulation reference line (suppressed in
raw-chart mode). Surface basalBodyTempC + ovulation-test + mucus on the
calendar day DTO so the chart reads from the existing calendar load.
- Cover the read states the prediction/disclaimer surfaces were missing:
pass the disclaimer to the predictions panel, render it on the calendar
tab, add per-tab error + retry, and gate the settings spinner.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Add `GET /api/cycle/day-logs?date=YYYY-MM-DD` returning the full day-log DTO
(or null) for one tz-anchored day so the web log-day sheet pre-fills instead
of opening blank — a blank re-log no longer nulls untouched or HealthKit-sourced
fields. Delete resolves the row id from the same read.
Persist an optional 1-4 Likert severity per symptom link (migration
0133_v1150_cycle_symptom_severity), carried through the shared symptom-link
writer and surfaced in the day-log DTO.
Sheet now captures the previously missing fields — spotting between periods,
pregnancy/progesterone home-test results, contraceptive kind — plus per-symptom
severity chips, a one-tap end-period boundary, and a Delete action. The wheel
ring marker sits at the 12-o'clock origin again (drop the double rotation), the
cycle view goes two-column on desktop, and the empty ring carries a first-period
call to action. New copy is localized across all six locales; the prediction and
fertility surfaces keep their disclaimers.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
The symptothermal layer ran against the full day-log history: detectTempShift
returned the earliest 3-over-6 rise and detectMucusPeak the last egg-white day
across all cycles, so a multi-cycle user with historical BBT confirmed a
months-old ovulation and the predicted next-period start landed in the past.
Scope the temperature/mucus detectors to the current cycle window
[lastConfirmedStart − BBT_WINDOW, today], take the latest qualifying temp shift,
and reject any confirmation whose next-start is already in the past.
Resolve luteal length through a single clamp. The predictor clamped to [10,16]
while the calendar adapter and phase mapper used the raw stored value, so the
ovulation dot and the OVULATORY band could land on different days for an
out-of-clamp profile. Export resolveLuteal/clampLuteal, route buildCalendar,
buildPhaseCycles and phaseForDay through it, and tighten the profile-prefs Zod
bound to the same [10,16] range.
Show the fertile window for AVOID_PREGNANCY as well as TRYING_TO_CONCEIVE per the
algorithm spec; it stays hidden for GENERAL_HEALTH/PERIMENOPAUSE.
Bound the day-log reads on the calendar and insights routes to the rendered span
plus the symptothermal lookback instead of the full history; cycle-length stats
already run off the MenstrualCycle rows.
Add mood and blood glucose as phase-crosstab outcome metrics under the same FDR
and per-group day floors. Mood is read from MoodEntry and injected as a synthetic
channel since it is not a measurement row.
Add multi-cycle, luteal-clamp and fertile-window fixtures.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Promote the reproductive HealthKit category types out of the
Apple-Health-import privacy-hold list and route them into cycle day-logs
instead of measurements, and surface cycle data on the three export
surfaces.
Import promotion:
- A new HealthKit -> cycle mapping module is the single source of truth for
how MenstrualFlow, IntermenstrualBleeding, CervicalMucusQuality,
OvulationTestResult, SexualActivity, PregnancyTestResult,
ProgesteroneTestResult, Contraceptive and the symptom category types fold
into CycleDayLog fields / seeded symptom keys. The XML importer
accumulates same-day reproductive samples and writes one canonical
day-log per day with source APPLE_HEALTH and a synthetic per-day
externalId for idempotent re-import. The fold is gated on cycle tracking
being enabled, so a non-cycle export never provisions cycle rows. A
contraceptive method nudges the profile goal toward avoiding pregnancy
only when the goal is still on its default. Basal body temperature stays
a measurement and mirrors onto the day-log. Pregnancy/Lactation status
and the pregnancy-bleeding types stay deferred; the cycle awareness types
remain server-derived.
Export:
- FHIR emits LMP (LOINC 8665-2), average cycle length (64700-8), period
length (64698-4) and the current phase as opt-in reproductive-health
observations grouped into their own document section.
- The doctor PDF gains an opt-in cycle section (recent cycles, average
length and variability, current phase), privacy-default off like mood.
- The full-backup export, the weekly backup worker and the off-host DR
snapshot include the cycle tables, and the admin restore re-creates them;
the day-log note round-trips as ciphertext and is never decrypted onto a
report surface.
Mapping table documented in docs/api/cycle-healthkit-mapping.md. Adds unit
+ integration coverage for the mapping, the import routing, the FHIR
observations and the backup round-trip. OpenAPI regenerated. Six-locale
strings added.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Add two cycle reminders through the existing notification cascade and the
honest self-hosting privacy framing for reproductive-health data.
Notifications:
- New event types CYCLE_PERIOD_SOON (fires ~2 days before the predicted
next-period start, from the cached prediction) and CYCLE_PERIOD_CONFIRM
(a gentle "did your period start?" on/after the predicted start while no
period is logged, within a short grace window). Both default OFF and are
gated again on cycleTrackingEnabled — opt in twice for a sensitive surface.
- A 15-minute pg-boss cron mirrors the mood-reminder worker: it scans users
with cycle tracking enabled + predictionEnabled, computes who is in-window
from the cached forecast, and dispatches one push per event per local day.
Idempotency anchors on the push_attempts ledger (no new table). The queue
is declared, registered in allQueues, scheduled, and wired to a boss.work
handler, with a source-grep guard so it cannot ship unregistered.
- Honours notificationPrefs.cycle.clientManaged (skip the server push when
the device owns local reminders, with a suppressed annotation, mirroring
the medication path) and CycleProfile.discreetNotifications (generic
"HealthLog reminder" body so no cycle event is named on the lock screen).
- Every attempt is recorded in push_attempts via the unchanged dispatcher.
Privacy / disclaimer:
- docs/self-hosting/reproductive-health-data.md — the "no cloud vendor to
subpoena" framing with the honest residual-threat caveat (your own host,
provider, backups, and devices remain part of the surface), citing the
2021 FTC settlement and 2025 verdict as public record only.
- docs/security/cycle-data-threat-model.md — a compact "protects against /
does not protect against" note, plus README pointers.
- CyclePredictionDisclaimer component (reusing the GLP-1 estimate-disclaimer
pattern) for every fertility/prediction surface: descriptive, not a
contraceptive method, not medical advice, never a safe-to-have-unprotected
-sex claim. 6-locale copy under cycle.disclaimer.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Add the menstrual-cycle phase as a channel in the existing FDR-guarded
correlation machinery, the same way rated mood factors were folded in —
no new statistics, the same Welch + Benjamini-Hochberg pipeline, the same
day floors and q = 0.10 gate.
Two complementary mechanisms, both confined to a gender-gated surface:
- a categorical luteal-vs-follicular contrast per outcome metric (resting
heart rate, HRV, sleep, steps, weight, basal/wrist/skin temperature),
surfacing one headline finding (resting-heart-rate-by-phase, falling
back to HRV); and
- the continuous phase ordinal folded into the lagged-Pearson matrix.
Phase never reaches the general correlations route — the temperature
channels held out of the general matrix are un-blocked only here, behind
the cycle gate, so a reproductive inference can never leak onto a
non-gated surface. Every row shows n, effect size, p and q; nothing is
fabricated on thin data and nothing is framed as causal.
Surface it through a new gated GET /api/cycle/insights and a drop-in
card that mirrors the mood-factor crosstab.
Add a cycle dimension to the Coach snapshot: current phase + day-of-cycle,
the next predicted event (period range + confidence + method, fertile
window goal-gated), and the headline phase finding — present only for a
cycle-enabled account, so a non-cycle snapshot is unchanged. A new ground
rule keeps the Coach descriptive: never contraception-grade, never a
"safe day" claim.
OpenAPI regenerated; phase-correlation + snapshot-inclusion tests added;
copy localised across all six locales.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Add the `/api/cycle/*` capture, calendar, history, and settings routes
plus the offline-sync delta extension for the v1.15 cycle-tracking
feature, all against the locked iOS contract.
- Enable flag: add nullable `cycleTrackingEnabled` to CycleProfile
(migration 0132). A null toggle derives from gender (FEMALE → on).
`isCycleEnabled()` is the single gate resolver; every `/api/cycle/*`
route 403s `{ errorCode: "cycle.disabled" }` when off. The resolved
flag surfaces additively on GET /api/auth/me.
- Routes (apiHandler + Zod + envelope + gate + annotate + auditLog):
POST/PATCH/DELETE day-logs (single), POST day-logs/bulk (idempotent,
capped 500, rate-limited 60/min, per-entry inserted/updated/duplicate/
skipped), POST period boundary, GET calendar (runs the deterministic
engine, debounced stale-while-revalidate cache, goal-gated fertile
window), GET cycles (history + median/MAD stats), GET profile,
DELETE cycles, PATCH /api/auth/me/cycle-prefs (deep-merge).
- Day-log note encrypts at rest (notesEncrypted); intent fields stay
queryable plaintext. Upsert keys on (userId, source, externalId) when
externalId present, else (userId, date).
- Offline sync: extend GET /api/sync/changes + the cursor with the
`cycleDays` + `cycles` domains (CURSOR_VERSION → 2). cycleDays
tombstones key on externalId else id; cycles on id.
- OpenAPI: register every route + DTO; regenerate the committed spec.
- i18n: cycle prediction disclaimer across all six locales.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
- The health-score strip is rebuilt as a calm, staggered signature reveal with
a distinct colour per score, a soft glow, and a "vs your normal" reference
arc — once per visit, reduced-motion-safe.
- Each Readiness / Sleep / Recovery / Strain / Stress score sheet carries a
short plain-language explanation of why the score landed where it did
(additive `assessment` field on the derived endpoint; fills without a
provider).
- Rated mood factors (work / sleep quality / stress …) are correlated against
vitals as a new card the assistant can cite — confidence-gated, observational.
- Medications "Add" splits into log-intake (incl. backdated) vs new medication;
sparse weekly/rolling meds show an open-cycle status line instead of a bare
percentage.
- Insights polish: equal-height trend cards, briefing heading above the card,
coach tone + length side by side.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Add an additive, non-breaking assessment field to GET /api/insights/derived:
{ text, source, updatedAt } | null, keyed to the requested metric id for the
five per-score ids (READINESS, SLEEP_SCORE, RECOVERY_SCORE, STRAIN_SCORE,
STRESS_SCORE). The field is null when the metric is not one of those or when
its status is not "ok". A deterministic text always fills it — composed from
the score's own contributors, so provider-less accounts and the demo are never
empty — and warmer provider prose overrides it once cached, warmed out of band
so the GET never blocks on a model round-trip. de/en, following the v1.12.12
deterministic-narrative model. The batch grid read returns assessment: null;
the detail sheets use the single-metric route.
Introduce a shared buildMetricSignal() helper: a token-lean, signal-rich
descriptor (current, own baseline, signed delta, spread, normal-swing verdict,
normal-range placement, contributors) computed server-side so the model states
the comparison instead of re-deriving it from raw buckets. Thread it into the
generic per-metric assessment snapshot and lead the base prompt from it. Add a
PROMPT_VERSION constant to the base system prompt so prompt changes are
traceable.
Regenerate docs/api/openapi.yaml.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
- Health score reads the all-time blood-pressure-in-range rate (not the trailing
30 days), so an account with BP history but no recent readings keeps its BP
pillar instead of showing "no rating"; the 30-day rate still drives the tile
headline. (Regression from the v1.8.7 BP-headline window change.)
- ACTIVITY_STEPS now has its own Insights sub-page + nav entry (it was tracked +
on the dashboard but absent from the Insights metric registry).
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
- Rolling-cadence (weekly GLP-1 injection) compliance now reconstructs the full
per-cycle history across the window instead of counting only the next-due dose,
so a faithful injection history reads an honest rate, not a 0%/100% flip; adds a
per-medication currentCycle state (on_track/due/missed/none) for a non-scary card.
- Sleep average reads from the de-duplicated per-night reconstruction (bare ASLEEP +
granular stages no longer double-count → no impossible ~20 h); night reconstruction
hardened against an empty-segment throw.
- Wellness-score tiles redesigned: gentle card-toned surface (was a saturated slab),
a larger thinner custom SVG ring with a soft per-score gradient, renamed
"Your health scores", fully legible in light + dark.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
