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Marc-André BombeckandClaude Opus 4.8
77a652a47c
Add the menstrual-cycle phase as a channel in the existing FDR-guarded correlation machinery, the same way rated mood factors were folded in — no new statistics, the same Welch + Benjamini-Hochberg pipeline, the same day floors and q = 0.10 gate. Two complementary mechanisms, both confined to a gender-gated surface: - a categorical luteal-vs-follicular contrast per outcome metric (resting heart rate, HRV, sleep, steps, weight, basal/wrist/skin temperature), surfacing one headline finding (resting-heart-rate-by-phase, falling back to HRV); and - the continuous phase ordinal folded into the lagged-Pearson matrix. Phase never reaches the general correlations route — the temperature channels held out of the general matrix are un-blocked only here, behind the cycle gate, so a reproductive inference can never leak onto a non-gated surface. Every row shows n, effect size, p and q; nothing is fabricated on thin data and nothing is framed as causal. Surface it through a new gated GET /api/cycle/insights and a drop-in card that mirrors the mood-factor crosstab. Add a cycle dimension to the Coach snapshot: current phase + day-of-cycle, the next predicted event (period range + confidence + method, fertile window goal-gated), and the headline phase finding — present only for a cycle-enabled account, so a non-cycle snapshot is unchanged. A new ground rule keeps the Coach descriptive: never contraception-grade, never a "safe day" claim. OpenAPI regenerated; phase-correlation + snapshot-inclusion tests added; copy localised across all six locales. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
docs/ — internal reference + operator playbooks
The user-facing documentation lives at https://docs.healthlog.dev — that's the canonical surface for self-hosting guides, integration walkthroughs, AI-provider setup, and the doctor-report workflow.
The files in this directory are the internal operator playbooks, audit notes, and machine-readable specs that ship alongside the source:
api/— the OpenAPI 3.1 spec for the native-client subset (iOS DTO codegen target). Seeapi/README.mdfor the preview commands.ops/— backup / restore + encryption-key-rotation playbooks. These are the runbooks an operator reaches for during an incident.self-hosting/— horizontal-scaling notes (HEALTHLOG_PROCESS_TYPE=web|worker|all) and the deploy-pipeline recipe. Routine install steps stay ondocs.healthlog.dev.migration/— release-by-release migration notes. Read the entry for the version you're upgrading from.audit/— per-release audit summaries archived for forensic traceability.apple-store-connect-checklist.md— the iOS submission gate.doctor-report.md— PDF generator design notes.codex-protocol-spec.md— Codex / ChatGPT OAuth protocol reverse-engineering notes.ui-guidelines.md— UI / a11y house style.
If you're a self-hoster looking to spin up an instance, start at https://docs.healthlog.dev or jump to the Quick Start in the project README.