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Marc-André Bombeck
aca497d9ac
Two daily series that both follow the season (temperature and blood pressure, daylight and sleep) correlated strongly with nothing between them. In a seeded simulation of such a pair the engine surfaced a finding in 58 % of 400-day runs and 30 % of 180-day runs, and a real next-day effect under the season came back with the wrong sign. Every daily pair now goes through seasonallyAdjustedPearson: a linear trend and one annual harmonic are removed from both series (trend only under 120 paired days), the residuals are correlated, and the p-value uses the Pyper-Peterman effective sample size. Shrinkage and the phrasing tier read the effective size too. BH-FDR and the effect floor are unchanged. Pairs too short to fit the basis are not tested. The weather channels are tested once over the mean of the day before and the day itself against the same day's outcome (lagDays 0), which pairs the overnight low with the night it shaped now that sleep is keyed on the wake day. Discovered pairs carry an additive nEff, the same-day templates are wired, and the matrix skips the weather read when the environment module is off. scripts/compare-correlation-findings.ts counts findings per account before and after, read-only, for the release-candidate dry run.
scripts/
One-shot operator and build scripts. These are not part of the running application — they are run by hand during a deploy, a backfill, or a release, or wired into CI. Recurring work belongs on pg-boss (src/lib/jobs/), not here.
How to run them
From a source checkout:
pnpm dlx tsx scripts/<file>.ts
The production image intentionally removes npm, pnpm, and Corepack. Only
container-safe scripts named by an operator runbook use its pinned
healthlog-tsx launcher; scripts that import the full application dependency
graph must run from a source checkout. scripts/ is excluded from the project
typecheck.
What lives here
generate-openapi.ts— emitsdocs/api/openapi.yamlfrom the registered Zod schemas (pnpm openapi:generate).check-openapi.ts— compares a freshly generated spec against the committed YAML; CI fails on drift (pnpm openapi:check).check-env.ts— pre-deploy env-var sanity check againstenv-manifest.json(pnpm check-env); wired into CI.assert-deploy.ts— post-deploy/api/versionassertion.rotate-encryption-key.ts— AES-256-GCM key rotation; seedocs/ops/encryption-key-rotation.md.restore-backup.ts— restore an off-host AES-GCM backup from an S3-compatible bucket.repair-apple-health-distance.ts— repair walking-distance rows theexport.zipimport stored 1000x too small; dry-run by default, seedocs/ops/apple-health-distance-repair.md.repair-intake-anomalies.ts— repair historic medication-ledger defects (duplicate dose-slot rows, implausibletaken_at); dry-run by default, seedocs/ops/intake-repair.md.backfill-rollups.ts,drain-per-sample-cumulative.ts,backfill-mood-note-column.ts— historical data backfills (note: the boot-timerollup-full-backfillqueue handles new accounts automatically; the CLI is the manual fallback).seed-demo.ts+seed-demo-v15.sql— populate a demo tenant.test-notifications.ts— exercise the notification dispatcher + reminder check.fetch-geolite2.sh— download the MaxMind GeoLite2 MMDBs (needs a licence key) beforedocker build.install-hooks.sh— install the local git hooks.generate-sw-version.mjs,print-bundle-report.mjs— service-worker version stamp and bundle-size report.i18n/— locale tooling;__tests__/— tests for the scripts above.
Conventions
See ../CLAUDE.md "Tests and commands" + "Self-hosting gotchas". Operator runbooks that drive these scripts live in ../docs/ops/.