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Marc-André Bombeck
6e72de1c35
Migrations 0402 to 0410: AI usage levels, biomarker aliases and merges, medication ingredients (with the supplement label run kind), life circumstance fact kinds, AI sections and AUDIT-C, Dawarich context, the pulse day-mean method, intraday hour buckets, the readable location drop and five relation link tables. Every new column carries its reader or a pending-consumer marker. 0409 refuses to run while any home, location period or stored day still holds a readable location, and names the counts. Locations are read from the sealed copy only; the encryption backfill no longer handles them, and the demo seed writes sealed locations only. The new tables are backed up and wiped, the new sealed columns are in the rotation registry with labels of their own, the AI usage level and the life-circumstance confirmations travel with the backup, and the wellbeing score reads the mental-health screeners only.
scripts/
One-shot operator and build scripts. These are not part of the running application — they are run by hand during a deploy, a backfill, or a release, or wired into CI. Recurring work belongs on pg-boss (src/lib/jobs/), not here.
How to run them
From a source checkout:
pnpm dlx tsx scripts/<file>.ts
The production image intentionally removes npm, pnpm, and Corepack. Only
container-safe scripts named by an operator runbook use its pinned
healthlog-tsx launcher; scripts that import the full application dependency
graph must run from a source checkout. scripts/ is excluded from the project
typecheck.
What lives here
generate-openapi.ts— emitsdocs/api/openapi.yamlfrom the registered Zod schemas (pnpm openapi:generate).check-openapi.ts— compares a freshly generated spec against the committed YAML; CI fails on drift (pnpm openapi:check).check-env.ts— pre-deploy env-var sanity check againstenv-manifest.json(pnpm check-env); wired into CI.assert-deploy.ts— post-deploy/api/versionassertion.rotate-encryption-key.ts— AES-256-GCM key rotation; seedocs/ops/encryption-key-rotation.md.restore-backup.ts— restore an off-host AES-GCM backup from an S3-compatible bucket.repair-apple-health-distance.ts— repair walking-distance rows theexport.zipimport stored 1000x too small; dry-run by default, seedocs/ops/apple-health-distance-repair.md.repair-intake-anomalies.ts— repair historic medication-ledger defects (duplicate dose-slot rows, implausibletaken_at); dry-run by default, seedocs/ops/intake-repair.md.backfill-rollups.ts,drain-per-sample-cumulative.ts,backfill-mood-note-column.ts— historical data backfills (note: the boot-timerollup-full-backfillqueue handles new accounts automatically; the CLI is the manual fallback).seed-demo.ts+seed-demo-v15.sql— populate a demo tenant.test-notifications.ts— exercise the notification dispatcher + reminder check.fetch-geolite2.sh— download the MaxMind GeoLite2 MMDBs (needs a licence key) beforedocker build.install-hooks.sh— install the local git hooks.generate-sw-version.mjs,print-bundle-report.mjs— service-worker version stamp and bundle-size report.i18n/— locale tooling;__tests__/— tests for the scripts above.
Conventions
See ../CLAUDE.md "Tests and commands" + "Self-hosting gotchas". Operator runbooks that drive these scripts live in ../docs/ops/.