Files
HealthLog/scripts
Marc-André Bombeck a14174fe4d Let a medication have several courses
A medication taken now and then (#1024) keeps one row and gains course
rows: calendar spans, both ends inclusive, an optional encrypted note, no
schedule or dose of their own. Courses never overlap and every course but
the latest has ended, so the latest course is always the one the
medication's startsOn/endsOn project. src/lib/medications/courses.ts is
the only writer of those two columns for a medication with courses; it
writes under a per-medication advisory lock and re-projects in the same
transaction, so reminders, the next-due line and intakeActionable keep
reading the columns and stay right.

- Migration 0368 adds medication_courses and backfills one course per
  medication window (an end-only window starts on the creation day, or
  on its end day when that lies earlier); a medication without a window
  stays course-less. Idempotent, data-preserving.
- GET/POST /api/medications/{id}/courses and PATCH/DELETE
  .../courses/{courseId} (owner-only); create seeds the first course
  from a window; the medication PUT edits the latest course and refuses
  a window that would break the rules (medications.course.*).
- List, detail, create and update carry courses, courseCount,
  previousCourseEndedOn and canStartCourse, resolved on the server.
- Compliance expands over the span of all courses and drops the slots
  between them; every compliance read selects the courses. A rolling
  cadence is not anchored by an intake from a previous course.
- The card names the last course's end and the running course's number;
  the detail Lifecycle group lists the courses with start, edit and
  delete. The Coach compliance block, the MCP resource, the doctor
  report window and table, the clinician view and FHIR (one
  MedicationStatement per course with effectivePeriod and status) read
  the courses.
- Backup carries courses per medication and the restore writes them and
  re-projects; an older file derives the one course its window
  describes. Wipe plan, encrypted columns, rotation and OpenAPI follow.
2026-10-03 22:39:25 +02:00
..
2026-05-14 23:49:32 +02:00
2026-05-16 09:28:40 +02:00
2026-05-16 14:19:57 +02:00

scripts/

One-shot operator and build scripts. These are not part of the running application — they are run by hand during a deploy, a backfill, or a release, or wired into CI. Recurring work belongs on pg-boss (src/lib/jobs/), not here.

How to run them

From a source checkout:

pnpm dlx tsx scripts/<file>.ts

The production image intentionally removes npm, pnpm, and Corepack. Only container-safe scripts named by an operator runbook use its pinned healthlog-tsx launcher; scripts that import the full application dependency graph must run from a source checkout. scripts/ is excluded from the project typecheck.

What lives here

  • generate-openapi.ts — emits docs/api/openapi.yaml from the registered Zod schemas (pnpm openapi:generate).
  • check-openapi.ts — compares a freshly generated spec against the committed YAML; CI fails on drift (pnpm openapi:check).
  • check-env.ts — pre-deploy env-var sanity check against env-manifest.json (pnpm check-env); wired into CI.
  • assert-deploy.ts — post-deploy /api/version assertion.
  • rotate-encryption-key.ts — AES-256-GCM key rotation; see docs/ops/encryption-key-rotation.md.
  • restore-backup.ts — restore an off-host AES-GCM backup from an S3-compatible bucket.
  • repair-apple-health-distance.ts — repair walking-distance rows the export.zip import stored 1000x too small; dry-run by default, see docs/ops/apple-health-distance-repair.md.
  • repair-intake-anomalies.ts — repair historic medication-ledger defects (duplicate dose-slot rows, implausible taken_at); dry-run by default, see docs/ops/intake-repair.md.
  • backfill-rollups.ts, drain-per-sample-cumulative.ts, backfill-mood-note-column.ts — historical data backfills (note: the boot-time rollup-full-backfill queue handles new accounts automatically; the CLI is the manual fallback).
  • seed-demo.ts + seed-demo-v15.sql — populate a demo tenant.
  • test-notifications.ts — exercise the notification dispatcher + reminder check.
  • fetch-geolite2.sh — download the MaxMind GeoLite2 MMDBs (needs a licence key) before docker build.
  • install-hooks.sh — install the local git hooks.
  • generate-sw-version.mjs, print-bundle-report.mjs — service-worker version stamp and bundle-size report.
  • i18n/ — locale tooling; __tests__/ — tests for the scripts above.

Conventions

See ../CLAUDE.md "Tests and commands" + "Self-hosting gotchas". Operator runbooks that drive these scripts live in ../docs/ops/.