Commit Graph
8055 Commits
Author SHA1 Message Date
Marc-André Bombeck 47a91d6922 fix(labs): never present a converted reading's printed range in the wrong unit
A converted reading's bounds move with its value, but the printed range text
stays in the unit the report used, and every reader preferred that text: the
list showed "Report range 3.9 to 5.5" beside 100.9 mg/dL, and the doctor
report and the FHIR referenceRange.text did the same. The text is still
stored verbatim. The range resolver now takes the reading's sourceUnit (as a
required field, so no reader can forget to select it) and, for a converted
reading, leaves the window's text empty so every surface states the converted
bounds in the marker's unit, and hands the printed text over separately with
its unit. The lab DTO carries it as printedReferenceText, and the note beside
a reading shows it as "as printed in mmol/L: ...".
2026-10-14 19:10:49 +02:00
Marc-André Bombeck cc0313c955 fix(labs): re-derive a marker's analyte key when its name or unit changes
The key is a function of the marker's name and unit, but it was only ever
filled, never replaced, so a marker renamed from Glucose to Cholesterol kept
converting readings with the glucose factor. The marker edit now re-derives
it with the same match the creation paths use (clearing it when the new name
matches nothing), and the fill step a reading runs brings a stored key back in
line with the name, so a key written before this fix is corrected the first
time it matters. The scan review derives the key the same way as the commit.
2026-10-14 18:59:32 +02:00
BernhardBuckel 747e0964ad feat(labs): show a reading's conversion in the scan review and beside the value
Slice 3 of phase 3 of #1095. The scan review no longer treats every reading in
another unit as unwritable. The server tells it which analyte the matched marker
is (markerAnalyteKey on each extracted row); a row whose unit differs but can be
converted starts selected and carries a badge saying what Save will store and
what the report stated ("Saved as 100.9 mg/dL, converted from 5.6 mmol/L"). A
row that cannot be converted keeps the existing blocked badge and error. Save
still sends what the report printed; the server converts, as in slice 2.

The review's duplicate flag also recognises a re-scan of a reading that was
stored converted, by what the report printed, the same rule the commit applies.

A converted reading carries a quiet "converted from 5.6 mmol/L" on the lab list
(row and tile) and the history list (phone and table), so a number nobody typed
can always be traced back to what the report printed.

Strings in all seven locales.

Refs #1095
2026-10-11 20:41:08 +02:00
BernhardBuckel caa7a937fd feat(labs): convert a reading into its marker's unit when the pair is known
Slice 2 of phase 3 of #1095. A reading that stated a unit other than its
marker's was refused. When the marker's analyte is known and the registry has the
pair, the three write paths now convert it instead: POST /api/labs, the OCR
commit and the document commit.

The converted value is stored at full precision in the marker's unit, with what
the report printed in the existing source_value and source_unit columns. The
report's own reference window is in the printed unit, so it is converted with the
value; otherwise the verdict would compare a converted value with an unconverted
window. A pair the registry does not have is still refused as before (the 422
now says why), as is a marker whose analyte is unknown.

The marker's key is filled the first time a reading needs it. The same scan
committed again is still a duplicate: a converted row holds the number in the
marker's unit, so the duplicate check also matches on what the report printed.
Editing the value of a converted reading clears the conversion record, because
the number is then the person's own.

The lab result DTO and the OpenAPI schemas (labs and the OCR commit) carry
converted, sourceValue and sourceUnit.

Refs #1095
2026-10-11 20:28:00 +02:00
BernhardBuckel 08c69d4a5a test(labs): give the biomarker fixtures the new analyteKey field
BiomarkerDto gained analyteKey, and two component test fixtures typed as it
were missing the field, which the typecheck job rejects.
2026-10-11 20:16:31 +02:00
BernhardBuckel 52ea3b9c2f feat(labs): link a marker to its analyte for the unit conversion
Slice 1 of phase 3 of #1095. A Biomarker row keeps only its name, so nothing
said which analyte it was. This adds the explicit alias list in the catalog the
issue settled on, including the registry-only keys (urea, blood urea nitrogen,
uric acid, total calcium, total bilirubin), and sets biomarkers.analyte_key
(from migration 0385) from it.

matchAnalyteKey equals a marker's folded name against the localised names of the
catalog seeds the registry knows and against the alias list. It matches the
whole name only, so "Calcium (ionisiert)" is not "Calcium"; a name two analytes
claim matches neither; and the marker's own unit must be one the analyte reaches,
so a marker called "Glucose" in a unit the registry cannot convert stays
unlinked.

The key is set when a marker is created (the biomarker route, the mint used by
lab writes, the legacy backfill) and, for an existing marker, by
ensureAnalyteKey the first time a reading needs it. It never overwrites a key
that is set. There is no boot job for the existing markers: the conversion that
uses the key fills it on first use, and a sweep can be added later if wanted.

The key is returned on the biomarker API and in the OpenAPI schema.

Refs #1095
2026-10-11 20:04:43 +02:00
kilian c2be166f72 Merge remote-tracking branch 'origin/main' into feat/lab-analyte-key-fill 2026-10-11 19:48:56 +02:00
dependabot[bot] bc7f3bf209 chore(deps): bump the production-weekly group across 1 directory with 2 updates (#1207)
Bumps the production-weekly group with 2 updates in the / directory: [lucide-react](https://github.com/lucide-icons/lucide/tree/HEAD/packages/lucide-react) and [nodemailer](https://github.com/nodemailer/nodemailer).


Updates `lucide-react` from 1.52.0 to 1.53.0
- [Release notes](https://github.com/lucide-icons/lucide/releases)
- [Commits](https://github.com/lucide-icons/lucide/commits/1.53.0/packages/lucide-react)

Updates `nodemailer` from 10.0.15 to 10.0.16
- [Release notes](https://github.com/nodemailer/nodemailer/releases)
- [Changelog](https://github.com/nodemailer/nodemailer/blob/master/CHANGELOG.md)
- [Commits](https://github.com/nodemailer/nodemailer/compare/v10.0.15...v10.0.16)

---
updated-dependencies:
- dependency-name: lucide-react
  dependency-version: 1.53.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: production-weekly
- dependency-name: nodemailer
  dependency-version: 10.0.16
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: production-weekly
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-10-11 17:17:03 +00:00
dependabot[bot] d748db0e10 chore(deps-dev): bump the development-weekly group with 3 updates (#1210)
Bumps the development-weekly group with 3 updates: [@playwright/test](https://github.com/microsoft/playwright), [lefthook](https://github.com/evilmartians/lefthook) and [shadcn](https://github.com/shadcn-ui/ui/tree/HEAD/packages/shadcn).


Updates `@playwright/test` from 1.63.0 to 1.64.0
- [Release notes](https://github.com/microsoft/playwright/releases)
- [Commits](https://github.com/microsoft/playwright/compare/v1.63.0...v1.64.0)

Updates `lefthook` from 2.1.17 to 2.2.1
- [Release notes](https://github.com/evilmartians/lefthook/releases)
- [Changelog](https://github.com/evilmartians/lefthook/blob/master/CHANGELOG.md)
- [Commits](https://github.com/evilmartians/lefthook/compare/v2.1.17...v2.2.1)

Updates `shadcn` from 4.21.3 to 4.21.4
- [Release notes](https://github.com/shadcn-ui/ui/releases)
- [Changelog](https://github.com/shadcn-ui/ui/blob/main/packages/shadcn/CHANGELOG.md)
- [Commits](https://github.com/shadcn-ui/ui/commits/shadcn@4.21.4/packages/shadcn)

---
updated-dependencies:
- dependency-name: "@playwright/test"
  dependency-version: 1.64.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: development-weekly
- dependency-name: lefthook
  dependency-version: 2.2.1
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: development-weekly
- dependency-name: shadcn
  dependency-version: 4.21.4
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: development-weekly
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-10-11 16:48:18 +00:00
dependabot[bot] 3f08e3a97b chore(deps): bump actions/upload-artifact from 7.0.1 to 7.0.2 (#1208)
Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 7.0.1 to 7.0.2.
- [Release notes](https://github.com/actions/upload-artifact/releases)
- [Commits](https://github.com/actions/upload-artifact/compare/043fb46d1a93c77aae656e7c1c64a875d1fc6a0a...cf430e030ddbb5b0abf93d22962f4752f3646cd9)

---
updated-dependencies:
- dependency-name: actions/upload-artifact
  dependency-version: 7.0.2
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-10-11 16:35:07 +00:00
dependabot[bot] 0fed7f02e6 chore(deps): bump the codeql-action group with 3 updates (#1206)
Bumps the codeql-action group with 3 updates: [github/codeql-action/init](https://github.com/github/codeql-action), [github/codeql-action/analyze](https://github.com/github/codeql-action) and [github/codeql-action/upload-sarif](https://github.com/github/codeql-action).


Updates `github/codeql-action/init` from 4.38.2 to 4.38.3
- [Release notes](https://github.com/github/codeql-action/releases)
- [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md)
- [Commits](https://github.com/github/codeql-action/compare/2892aa5e19bbd11bc0cff5427e3b750a04d9e3c2...24c54180a607b1449ed407dd24f251e4e9147c8d)

Updates `github/codeql-action/analyze` from 4.38.2 to 4.38.3
- [Release notes](https://github.com/github/codeql-action/releases)
- [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md)
- [Commits](https://github.com/github/codeql-action/compare/2892aa5e19bbd11bc0cff5427e3b750a04d9e3c2...24c54180a607b1449ed407dd24f251e4e9147c8d)

Updates `github/codeql-action/upload-sarif` from 4.38.2 to 4.38.3
- [Release notes](https://github.com/github/codeql-action/releases)
- [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md)
- [Commits](https://github.com/github/codeql-action/compare/2892aa5e19bbd11bc0cff5427e3b750a04d9e3c2...24c54180a607b1449ed407dd24f251e4e9147c8d)

---
updated-dependencies:
- dependency-name: github/codeql-action/init
  dependency-version: 4.38.3
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: codeql-action
- dependency-name: github/codeql-action/analyze
  dependency-version: 4.38.3
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: codeql-action
- dependency-name: github/codeql-action/upload-sarif
  dependency-version: 4.38.3
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: codeql-action
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-10-11 16:19:49 +00:00
Marc-André Bombeck c6db4501f1 Merge pull request #1205 from MBombeck/release/v1.42.2
Release v1.42.2
v1.42.2
2026-10-11 16:10:10 +02:00
Marc-André Bombeck b9471c3a62 docs(changelog): describe the fitted timeline window and the ended-course rule 2026-10-11 15:35:04 +02:00
Marc-André Bombeck e833bd0949 Merge branch 'v1422/review2' into release/v1.42.2 2026-10-11 15:33:51 +02:00
Marc-André Bombeck a54b47428e test(timeline): match the zoom each journey opened with
The day-strip journey opens /timeline?zoom=all, so closing the day
returns there, not to bare /timeline. An unreadable range now opens on
the default window, which for this record is three months.
2026-10-11 15:25:05 +02:00
Marc-André Bombeck ab104ab633 refactor(medications): spread the intake-tracking filter at each auto-take reader
The shared eligibility filter hid TRACKED_INTAKE_WHERE from the
structural guard that checks every schedule and intake reader honours
the switch. Each reader now spreads it itself.
2026-10-11 15:23:57 +02:00
Marc-André Bombeck 5bfdc9d04b fix(jobs): one bad medication never stops the auto-take pass
A row whose follow-up threw, or whose stored time zone the runtime
refuses, aborted the pass for every other person. Each medication now
runs on its own: a failure is named in a warning, counted, and the next
one runs; an unusable zone falls back to the default as in other jobs.
2026-10-11 15:19:08 +02:00
Marc-André Bombeck 88aec7edb6 fix(search): key the in-flight search by actor and record
Two tabs searching two different records (one's own and a shared one)
cancelled each other, because a new search aborted any earlier one by
the same actor. The slot is now held per actor and record.
2026-10-11 15:17:43 +02:00
Marc-André Bombeck 24f06884b3 fix(reminders): an ended course reads as not reminding
The worker expands no slot past endsOn, so it never reminds for a
course that has ended, but remindersActive still read true for it. The
reminder gate now includes the course end on the person's clock, so the
published value, the worker and the admin check make the same decision.
2026-10-11 15:16:54 +02:00
Marc-André Bombeck 1ba422b87c fix(backup): restart the auto-take floor at the restore
A portable file carries no removed doses, so a restored medication with
automatic recording on had the pass fill a dose the person deleted in
the days before the export. The restored floor is now the later of the
file's value and the restore.
2026-10-11 15:14:43 +02:00
Marc-André Bombeck 38900656a3 fix(audit): name automatic dose recording in medication audit rows
Switching autoMarkTaken on or off now appears in the medication.update
row with its previous value, and medication.create records whether the
medication starts with doses recorded automatically.
2026-10-11 15:11:27 +02:00
Marc-André Bombeck fe782493a1 fix(medications): a take bound to another slot never claims this one
The auto-take pass left a slot alone when any take fell inside its band,
so the morning dose pinned and taken at 19:00 also hid the 20:00 dose.
Only a take attributed to no other expected slot counts as nearby now.
2026-10-11 15:10:01 +02:00
Marc-André Bombeck dc86c42bef feat(timeline): fit the default window to the record
Without a zoom in the URL the window now follows the record: one that
starts inside the last three months opens on three months clamped to
its first entry (at least four weeks up to today), an older one with
entries there opens on three months, an older one without opens on
everything, and an empty one keeps the empty state. The choice is made
from the first answer before anything is drawn, so the page does not
jump between windows.
2026-10-11 15:08:57 +02:00
Marc-André Bombeck 0ff1340ff4 fix(medications): never backfill days an edit reopens under auto-take
A start moved earlier, an end moved later or removed, or a medication
made active again reopened past slots, and the auto-take pass filled up
to a week of them as taken. The course window writer and the
re-activation paths now move the auto-take floor to the moment of the
edit.
2026-10-11 15:07:06 +02:00
Marc-André Bombeck 23e0cc35af fix(timeline): open on everything when the default window is empty
Opened without a zoom, three months that hold nothing while the record
has older entries now show everything instead of a dead end, without
writing the zoom into the URL. A window named in the URL that is empty
offers "Show everything" when the record has entries before it. An
unreadable ?zoom= or range opens on the same default as no zoom.
2026-10-11 15:04:14 +02:00
Marc-André Bombeck a4cccc11ba fix(medications): keep an auto-taken rolling cadence moving
A rolling cadence yields only lastIntakeAt + N, so a slot the auto-take
pass never records (before the switch-on floor, past the catch-up
window, inside a pause, skipped or removed by the person) held it still
for good. Step the cadence forward by N past every such slot, keeping
its rhythm, and feed the stepped anchor to the card, dashboard and
schedule-tool next due so they show the slot the pass will record.
2026-10-11 15:00:37 +02:00
Marc-André Bombeck 0375c2adc6 test(reminders): drop the fixture fields the merge doubled 2026-10-11 14:49:43 +02:00
Marc-André Bombeck 6fe1a050a6 chore(release): v1.42.2 2026-10-11 14:42:03 +02:00
Marc-André Bombeck 765dbe1e7f Merge branch 'v1422/caption' into release/v1.42.2 2026-10-11 14:41:28 +02:00
Marc-André Bombeck 2f780df0b0 Merge branch 'v1422/autotaken' into release/v1.42.2 2026-10-11 14:41:28 +02:00
Marc-André Bombeck bfba7aec67 Merge branch 'v1422/review' into release/v1.42.2 2026-10-11 14:41:27 +02:00
Marc-André Bombeck 7ee72d0161 fix(search): admit the search POST at read level through a declared, frozen readOverPost 2026-10-11 14:21:56 +02:00
Marc-André Bombeck 4c598655b7 test(reminders): give the reminder fixtures the full gate row 2026-10-11 14:17:36 +02:00
Marc-André Bombeck 195fa28cc5 feat(medications): publish the resolved reminder decision as remindersActive 2026-10-11 14:09:22 +02:00
Marc-André Bombeck 1bf6108b37 docs(search): describe the command palette's record search 2026-10-11 14:00:31 +02:00
Marc-André Bombeck 3e2426187c test(checkups): pin that a linked visit older than the list's newest hundred is read and opened 2026-10-11 13:59:59 +02:00
Marc-André Bombeck 9a86a9427b fix(oura): name the issuer refusal on the integrations page 2026-10-11 13:59:05 +02:00
Marc-André Bombeck 5d7e0248b6 fix(search): probe one row past each cap so a source holding exactly the cap is not reported truncated 2026-10-11 13:57:43 +02:00
Marc-André Bombeck 55bfb0a439 feat(sync): carry the automatic-recording marker on intake upserts 2026-10-11 13:56:28 +02:00
Marc-André Bombeck 41049b3837 fix(search): bound the clinical kinds by the search budget, one search per actor, query in a POST body 2026-10-11 13:56:24 +02:00
Marc-André Bombeck e93b4f249f test: drop an unused constant 2026-10-11 13:55:46 +02:00
Marc-André Bombeck 2a626be92d style: format the auto-take changes 2026-10-11 13:53:40 +02:00
Marc-André Bombeck 7417d8f423 test(medications): prove the auto-take pass against Postgres 2026-10-11 13:53:35 +02:00
Marc-André Bombeck 5affa9142c test(medications): cover the auto-take pass 2026-10-11 13:52:22 +02:00
Marc-André Bombeck 4386ac820e test: register the auto-take job and field in the existing guards 2026-10-11 13:50:56 +02:00
Marc-André Bombeck 138792d555 docs(db): correct the build cost note on the noted-readings index migration 2026-10-11 13:50:30 +02:00
Marc-André Bombeck 3c6150e837 fix(admin): sum today's AI spend on each account's own local day 2026-10-11 13:50:17 +02:00
Marc-André Bombeck 67a55def44 docs(api): document the auto-mark-taken fields 2026-10-11 13:47:37 +02:00
Marc-André Bombeck c94e109bf0 feat(medications): record scheduled doses automatically 2026-10-11 13:46:16 +02:00
Marc-André Bombeck 5dbc6fcec1 fix(notifications): keep a quick answer single-use after its entry is purged and document the topic exposure 2026-10-11 13:46:12 +02:00