mirror of
https://github.com/MBombeck/HealthLog.git
synced 2026-11-07 04:12:04 +00:00
Stryker runs against encryption at rest, medication compliance, the rollups, source ranking, unit conversion and backup validation, with the unit tests that live next to them (vitest.mutation.config.mts). It is too slow for a pull request and runs nightly and on demand (.github/workflows/mutation.yml). scripts/mutation-floors.mjs reads the JSON report and fails when a module scores below its floor in stryker.floors.json, so one well-tested module cannot hide a weak one. The floors sit two points below the first measured scores: crypto 46.9 %, compliance 66.8 %, rollups 41.7 %, source ranking 57.0 %, units 87.4 %, backup validation 25.5 %. @stryker-mutator/vitest-runner 10.0.0 predates Vitest 5, which names a test "describe > test" where the runner still built "describe test". Every test inside a describe block was filtered out of the mutant runs, so nearly every mutant survived (5.5 % across the set). A pnpm patch builds the name the way Vitest 5 does; the Docker dependency stage copies the patches directory, which the frozen install needs.
334 lines
19 KiB
Docker
334 lines
19 KiB
Docker
# ── Stage 1: Dependencies ──────────────────────────────────
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FROM node:22-alpine@sha256:16e22a550f3863206a3f701448c45f7912c6896a62de43add43bb9c86130c3e2 AS deps
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RUN corepack enable && corepack prepare pnpm@11.15.1 --activate
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WORKDIR /app
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COPY package.json pnpm-lock.yaml pnpm-workspace.yaml ./
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# The dependency patches pnpm-workspace.yaml names; the frozen install
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# refuses to run without them.
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COPY patches patches
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COPY scripts/prepare.mjs scripts/prepare.mjs
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RUN pnpm install --frozen-lockfile --prod=false
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# ── Stage 2: Build ─────────────────────────────────────────
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FROM node:22-alpine@sha256:16e22a550f3863206a3f701448c45f7912c6896a62de43add43bb9c86130c3e2 AS builder
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RUN corepack enable && corepack prepare pnpm@11.15.1 --activate
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WORKDIR /app
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# v1.4.43 B11 — version build-arg threaded into the layer cache key.
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# Pre-v1.4.43 the docker-publish workflow shipped a stale package.json
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# version baked into the bundle because BuildKit reused the `pnpm build`
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# layer across releases (the COPY . . layer key was content-stable when
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# only the version string had changed and the next pnpm install layer
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# was warm). Passing the tag as a build-arg forces a per-release cache
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# miss on this layer and forwards the value into the runtime env so
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# /api/version reads from $NEXT_PUBLIC_APP_VERSION first.
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ARG NEXT_PUBLIC_APP_VERSION
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ENV NEXT_PUBLIC_APP_VERSION=$NEXT_PUBLIC_APP_VERSION
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# Short Git SHA of the release commit, same workflow source as the
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# version arg above. Changes exactly when the source changes, so it
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# adds no cache churn beyond what the COPY below already causes.
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# /api/version surfaces it as `buildSha` for deploy verification
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# (docs/ops/deploy.md). The built-at timestamp is intentionally NOT
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# set in this stage: it differs on every run and would bust the
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# `pnpm build` layer cache even for content-identical rebuilds — the
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# runner stage below carries it instead (the route reads process.env
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# at request time, not at bundle time).
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ARG NEXT_PUBLIC_APP_BUILD_SHA
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ENV NEXT_PUBLIC_APP_BUILD_SHA=$NEXT_PUBLIC_APP_BUILD_SHA
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COPY --from=deps /app/node_modules ./node_modules
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COPY . .
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# Generate Prisma client
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RUN pnpm db:generate
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# Build Next.js
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ENV NEXT_TELEMETRY_DISABLED=1
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# Keep the larger V8 heap build-only. Next's repository-wide TypeScript
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# worker exceeds the default ~4 GiB old-space ceiling; the runner stage below
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# starts fresh and therefore does not inherit this setting.
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RUN NODE_OPTIONS=--max-old-space-size=8192 pnpm build
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# Record which pdfjs-dist the top-level dependency actually resolves to. pnpm
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# links a direct dependency at `node_modules/<name>`, so this reads the exact
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# pinned copy rather than guessing. The runner stage hoists that version by
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# name; see the note there for why guessing was wrong.
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RUN node -p "require('/app/node_modules/pdfjs-dist/package.json').version" \
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> /app/.pdfjs-version
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# The same for @napi-rs/canvas, whose native binary must match its JS loader.
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RUN node -p "require('/app/node_modules/@napi-rs/canvas/package.json').version" \
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> /app/.canvas-version
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# ── Stage 3: Production runner ─────────────────────────────
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FROM node:22-alpine@sha256:16e22a550f3863206a3f701448c45f7912c6896a62de43add43bb9c86130c3e2 AS runner
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# `tzdata` is required so Europe/Berlin schedules (pg-boss cron, locale-aware
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# timestamp formatting) resolve to the actual offset instead of silently
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# falling back to UTC on Alpine images that ship without it.
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#
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# `apk upgrade` pulls in OS-package security fixes the pinned base digest
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# has not absorbed yet (the digest pin stays for build reproducibility;
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# security patches from the Alpine repo override it deliberately —
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# CVE-2026-14456 in openssl was the first instance the container scan
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# caught between base-image rebuilds).
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RUN apk add --no-cache tzdata && apk upgrade --no-cache
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WORKDIR /app
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ENV NODE_ENV=production
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ENV NEXT_TELEMETRY_DISABLED=1
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ENV TZ=Europe/Berlin
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# When the heap runs out, Node writes a diagnostic report (the JavaScript
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# and native stacks, heap spaces, libuv handles) to stderr, where
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# `docker compose logs` and Loki keep it; without it the log holds one
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# line. Environment variables and network interfaces are left out, so no
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# key, password or address from the environment reaches the log. An
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# operator who sets NODE_OPTIONS replaces this value and should carry these
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# flags over (docs/ops/heap-diagnostics.md).
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ENV NODE_OPTIONS="--report-on-fatalerror --report-filename=stderr --report-exclude-env --report-exclude-network"
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# v1.4.43 B11 — forward NEXT_PUBLIC_APP_VERSION from the builder stage
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# into the runner so /api/version reads the build-arg value instead of
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# the package.json fallback. The variable is keyed to the CI tag ref
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# (`v1.4.43`, etc.), so a release that bumps the tag but cache-reuses
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# the prior `pnpm build` layer still surfaces the right runtime version.
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ARG NEXT_PUBLIC_APP_VERSION
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ENV NEXT_PUBLIC_APP_VERSION=$NEXT_PUBLIC_APP_VERSION
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# Short Git SHA the image was built from — /api/version returns it as
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# `buildSha` so an operator can verify which commit a running `:latest`
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# container actually carries (the deploy runbook checks it after every
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# deploy). Provided by docker-publish.yml alongside the version arg.
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ARG NEXT_PUBLIC_APP_BUILD_SHA
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ENV NEXT_PUBLIC_APP_BUILD_SHA=$NEXT_PUBLIC_APP_BUILD_SHA
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RUN addgroup --system --gid 1001 nodejs && \
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adduser --system --uid 1001 nextjs
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# Copy built assets
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COPY --from=builder /app/public ./public
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COPY --from=builder --chown=nextjs:nodejs /app/.next/standalone ./
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COPY --from=builder --chown=nextjs:nodejs /app/.next/static ./.next/static
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# Next's standalone output must carry the externalized worker dependencies.
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# Prisma's pure-JS adapter stays bundled; only modules loaded through native
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# Node resolution belong in this runtime assertion.
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#
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# `pg` is a direct entry in `dependencies` for this line's sake, and it has to
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# stay there. It used to sit in devDependencies and the assertion still passed,
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# but only by coincidence: the version our own entry pinned happened to match
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# the one @prisma/adapter-pg pulled in, so both names resolved to a single
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# copy in the store and the file tracer packed it whole. Bumping the adapter to
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# 7.10.0 moved its transitive pg to 8.23.0 while ours stayed at 8.22.0. The
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# tracer then packed only the copy the adapter reached, the top-level link
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# pointed at the other one, and this line failed with "Cannot find module
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# '/app/node_modules/pg/lib/index.js'" on both architectures. Declaring the
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# runtime requirement makes the two resolve to the same copy by construction.
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RUN node -e "require.resolve('pg-boss'); require.resolve('pg')"
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# @napi-rs/canvas (document PDF rasterization): Next's file tracer copies the
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# native binary's package into the standalone tree but NOT the pnpm symlinks that
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# resolve it, so at runtime nothing can `require('@napi-rs/canvas')`. TWO
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# resolutions must work: (1) pdfjs-dist does a bare `require('@napi-rs/canvas')`
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# from its OWN dir — Node walks up to /app/node_modules, so the package must be
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# HOISTED to the top level there (verified: without it pdfjs logs "Cannot load
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# @napi-rs/canvas" → "Cannot polyfill DOMMatrix" → rasterize ReferenceError);
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# (2) @napi-rs/canvas's own loader then resolves its platform binary. Hoist BOTH
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# the canvas package and the musl binary package to /app/node_modules/@napi-rs
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# via symlink into the .pnpm store, and drop the prebuilt .node into the canvas
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# dir: the loader tries that local file (`require('./skia.<triple>.node')`)
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# before the platform package, so it decides which binary runs.
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#
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# Hoist the version the app pins, by name, exactly like pdfjs-dist below. The
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# store holds a second, older canvas that pdf-parse's own pdfjs-dist pulls in,
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# and this step used to take whichever `find | head -1` returned first. It
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# returned the old binary, which then sat next to the new loader: rendering
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# still worked, but `loadImage` called an `Image.decode` the old binary does
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# not have, and every preview thumbnail failed with "image.decode is not a
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# function". Name the version, and fail the build when the binary that lands
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# in the canvas dir is not that version's.
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COPY --from=builder /app/.canvas-version /tmp/.canvas-version
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RUN set -e; \
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CANVAS_VERSION="$(cat /tmp/.canvas-version)"; \
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rm -f /tmp/.canvas-version; \
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CANVAS_DIR="/app/node_modules/.pnpm/@napi-rs+canvas@${CANVAS_VERSION}/node_modules/@napi-rs/canvas"; \
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MUSL_DIR="$(find /app/node_modules/.pnpm -maxdepth 4 -type d -path "*@napi-rs+canvas-linux-*-musl@${CANVAS_VERSION}/node_modules/@napi-rs/canvas-linux-*-musl" 2>/dev/null | head -1)"; \
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if [ ! -d "$CANVAS_DIR" ] || [ -z "$MUSL_DIR" ]; then \
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echo "ERROR: pinned @napi-rs/canvas@${CANVAS_VERSION} or its musl binary did not reach the traced image."; \
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echo "Present instead:"; \
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find /app/node_modules/.pnpm -maxdepth 1 -name '@napi-rs+canvas*' 2>/dev/null; \
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exit 1; \
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fi; \
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NODE_BIN="$(find "$MUSL_DIR" -maxdepth 1 -name 'skia.linux-*-musl.node' | head -1)"; \
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[ -n "$NODE_BIN" ] || { echo "ERROR: no skia binary in $MUSL_DIR"; exit 1; }; \
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mkdir -p /app/node_modules/@napi-rs; \
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ln -sfn "$CANVAS_DIR" /app/node_modules/@napi-rs/canvas; \
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ln -sfn "$MUSL_DIR" "/app/node_modules/@napi-rs/$(basename "$MUSL_DIR")"; \
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cp "$NODE_BIN" "$CANVAS_DIR/"; \
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chown -R nextjs:nodejs /app/node_modules/@napi-rs; \
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BIN_VERSION="$(node -p "require('$MUSL_DIR/package.json').version")"; \
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[ "$BIN_VERSION" = "$CANVAS_VERSION" ] || { echo "ERROR: canvas binary is $BIN_VERSION, loader is $CANVAS_VERSION"; exit 1; }; \
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cmp -s "$NODE_BIN" "$CANVAS_DIR/$(basename "$NODE_BIN")" || { echo "ERROR: the canvas dir holds a different binary"; exit 1; }; \
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echo "canvas hoisted for pdfjs: $CANVAS_DIR (binary $BIN_VERSION from $MUSL_DIR)"
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# pdfjs-dist is `serverExternalPackages` (NOT bundled — the bundled copy's render
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# path breaks in the standalone image), so the server does a runtime bare
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# `import('pdfjs-dist/legacy/build/pdf.mjs')`. Node resolves that up to
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# /app/node_modules, so hoist the real pnpm-store copy to the top level too.
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#
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# Hoist the version the app pins, by name. More than one pdfjs-dist reaches the
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# store — `pdf-parse` carries its own, older copy for the text-extraction path —
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# and this step used to take whatever `find | head -1` returned first. That is
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# readdir order, so it could hoist the OLDER copy and the version named in
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# package.json would never run in the image: the renderer resolving one version
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# while every local check exercised another. Name the version and fail the build
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# when it is absent, instead of degrading to whichever copy comes back first.
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COPY --from=builder /app/.pdfjs-version /tmp/.pdfjs-version
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RUN set -e; \
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PDFJS_VERSION="$(cat /tmp/.pdfjs-version)"; \
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PDFJS_DIR="/app/node_modules/.pnpm/pdfjs-dist@${PDFJS_VERSION}/node_modules/pdfjs-dist"; \
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if [ ! -d "$PDFJS_DIR" ]; then \
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echo "ERROR: pinned pdfjs-dist@${PDFJS_VERSION} did not reach the traced image."; \
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echo "Present instead:"; \
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find /app/node_modules/.pnpm -maxdepth 4 -type d -path '*pdfjs-dist@*/node_modules/pdfjs-dist' 2>/dev/null; \
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exit 1; \
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fi; \
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ln -sfn "$PDFJS_DIR" /app/node_modules/pdfjs-dist; \
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chown -h nextjs:nodejs /app/node_modules/pdfjs-dist; \
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rm -f /tmp/.pdfjs-version; \
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RESOLVED="$(node -p "require('/app/node_modules/pdfjs-dist/package.json').version")"; \
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[ "$RESOLVED" = "$PDFJS_VERSION" ] || { echo "ERROR: hoisted pdfjs-dist is $RESOLVED, expected $PDFJS_VERSION"; exit 1; }; \
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echo "pdfjs-dist hoisted: $PDFJS_DIR (resolves as $RESOLVED)"
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# Copy Prisma for migrations (schema, migration SQL, config, engines)
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COPY --from=builder /app/prisma ./prisma
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COPY --from=builder /app/prisma.config.ts ./prisma.config.ts
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COPY --from=builder /app/src/generated ./src/generated
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# Operator maintenance scripts that a runbook tells the operator to run inside
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# this container (`docs/ops/password-reset.md`, `docs/ops/intake-repair.md`).
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# The standalone output carries none of `scripts/`, so without these lines the
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# documented `docker compose exec app node scripts/reset-password.mjs` failed
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# with "Cannot find module". Only self-contained scripts belong here: plain
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# `node` or the `healthlog-tsx` launcher below, resolving `pg` and
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# `@node-rs/argon2` from the traced runtime tree. Scripts that import the
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# application graph (`@/…`, the generated Prisma client) run from a source
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# checkout instead. `src/__tests__/container-scripts-ship-guard.test.ts` holds
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# the runbooks and the entrypoint against this list. `pending-migrations.mjs`
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# and `migrate-deploy.mjs` are the entrypoint's own: the first logs the
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# pending migration count, the second runs `migrate deploy` with its
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# lock-timeout retry. Root-owned on purpose: the app user can run them but not
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# rewrite them.
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COPY --from=builder /app/scripts/reset-password.mjs ./scripts/reset-password.mjs
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COPY --from=builder /app/scripts/pending-migrations.mjs ./scripts/pending-migrations.mjs
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COPY --from=builder /app/scripts/migrate-deploy.mjs ./scripts/migrate-deploy.mjs
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COPY --from=builder /app/src/lib/auth/argon2-params.mjs ./src/lib/auth/argon2-params.mjs
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COPY --from=builder /app/scripts/repair-intake-anomalies.ts ./scripts/repair-intake-anomalies.ts
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# Prove the reset CLI's imports resolve in this tree: with every import found
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# it stops at its own usage line; a missing module throws before reaching it.
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RUN node scripts/reset-password.mjs 2>&1 | grep -q "reset-password: usage:"
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# The boot notice parses, and the `pg` it loads on a real boot resolves here.
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RUN env -u DATABASE_URL node scripts/pending-migrations.mjs && \
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node --input-type=module -e "await import('pg')" && \
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node --input-type=module -e "await import('./scripts/migrate-deploy.mjs')"
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# Install the migration CLI, its config dependency, and a pinned launcher for
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# the maintenance scripts already shipped in the standalone tree. The Prisma
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# config loads dotenv from /app, so expose the isolated copy there before
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# stripping npm/Corepack and their caches from the runtime surface.
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#
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# This install belongs to npm, not pnpm, so the `overrides` block in
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# `pnpm-workspace.yaml` does not reach it: a package pinned there for the app
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# tree still arrives here at whatever version Prisma asks for. That is not
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# hypothetical. `prisma@7.8.0` resolves `@prisma/config@7.8.0`, which resolves
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# `deepmerge-ts@7.1.5`, and the image scan reported CVE-2026-40345 (HIGH,
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# stack exhaustion on recursive merges) against `/opt/prisma-cli` on a commit
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# whose dependency audit over the app tree was green. Two installs, two
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# override mechanisms, one of them set. `overrides` is npm's own mechanism and
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# `npm pkg set` writes it into the package.json that `npm init -y` just
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# created, before anything resolves.
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#
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# Measured by rebuilding this exact install both ways: without the field
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# `deepmerge-ts@7.1.5` lands, with it `8.0.1` lands and `prisma --version`
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# still reports 7.8.0. Keep the range in step with the entry in
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# `pnpm-workspace.yaml` — they are one decision applied to two package
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# managers, and a fix that lands in only one of them is the defect above.
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#
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# The same class recurred on 2026-09-02: the image scan reported
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# `@hono/node-server@1.19.11` (GHSA-frvp-7c67-39w9, CVE-2026-39406) and
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# `valibot@1.2.0` (CVE-2026-59952) under this path, both reached through
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# `prisma -> @prisma/dev`, while the app tree carried 1.19.17 and a pin the
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# npm install never reads. Rebuilding this install both ways confirms it:
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# without the two fields below npm resolves 1.19.11 and 1.2.0, with them it
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# resolves 1.19.17 and 1.4.2, and `prisma --version` still reports 7.8.0.
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RUN mkdir -p /opt/prisma-cli && \
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cd /opt/prisma-cli && \
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npm init -y && \
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npm pkg set 'overrides.deepmerge-ts=^8.0.0' && \
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npm pkg set 'overrides.mysql2=^3.22.0' && \
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npm pkg set 'overrides.@hono/node-server=^1.19.15' && \
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npm pkg set 'overrides.valibot=^1.4.2' && \
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npm install --omit=dev prisma@7.10.0 @prisma/engines@7.10.0 tsx@4.23.1 dotenv@18.0.6 && \
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ln -sfn /opt/prisma-cli/node_modules/.bin/tsx /usr/local/bin/healthlog-tsx && \
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ln -sfn /opt/prisma-cli/node_modules/dotenv /app/node_modules/dotenv && \
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ln -sfn /opt/prisma-cli/node_modules/prisma /app/node_modules/prisma && \
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rm -rf /usr/local/lib/node_modules/npm /usr/local/lib/node_modules/corepack /root/.cache/node/corepack /root/.npm && \
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rm -f /usr/local/bin/npm /usr/local/bin/npx /usr/local/bin/corepack /usr/local/bin/pnpm /usr/local/bin/pnpx
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# Same proof for the intake-repair script under the launcher it is documented
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# with: its `pg` import resolves, so it reaches its own DATABASE_URL check.
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RUN env -u DATABASE_URL healthlog-tsx scripts/repair-intake-anomalies.ts 2>&1 | grep -q "DATABASE_URL must be set"
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# v1.4.27 B3 — offline GeoLite2 databases for IP→location and IP→ASN
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# lookups. The MMDB files live in `/opt/geolite2/` and are read by
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# `src/lib/geo.ts` via `mmdb-lib`. They are downloaded outside the
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# Docker build by `scripts/fetch-geolite2.sh` (operator runs it before
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# `docker build` with a MaxMind license key) and staged in
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# `assets/geolite2/`. The README + .gitkeep are always present so the
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# COPY target exists; if the maintainer skipped the fetch step the
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# image builds without the DBs and the resolver falls back to the
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# online `ipwho.is` provider — matches v1.4.26 behaviour.
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#
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# Attribution (CC BY-SA 4.0): see `docs/audit/v1427-summary.md` and
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# `/about` in the running app.
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#
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# v1.37.7 (issue #659) — the directory is owned by the unprivileged `nextjs`
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# user so the runtime worker can WRITE it: a self-hoster who sets
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# MAXMIND_LICENSE_KEY on the published image has the databases fetched into
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# this directory at runtime (src/lib/geo/geolite2-fetch.ts) with no rebuild or
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# manual mount. `tar`/`gzip` for the extraction ship in the busybox base. A
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# read-only bind mount at this path (the bring-your-own-database route) still
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# works — the runtime fetch just fails soft and the mounted files stand.
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RUN mkdir -p /opt/geolite2 && chown nextjs:nodejs /opt/geolite2
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COPY --chown=nextjs:nodejs assets/geolite2/ /opt/geolite2/
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# ISO-8601 build timestamp — /api/version returns it as `builtAt`.
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# Declared this late in the stage on purpose: the value differs on
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# every CI run, and every instruction after an ARG shares its cache
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# fate. Down here the only layers it invalidates are the cheap
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# entrypoint COPY/chmod below; the npm-install layers above stay
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# cache-warm across rebuilds of the same release.
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ARG NEXT_PUBLIC_APP_BUILT_AT
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ENV NEXT_PUBLIC_APP_BUILT_AT=$NEXT_PUBLIC_APP_BUILT_AT
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# Entrypoint script (runs migrations, then starts app)
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COPY docker-entrypoint.sh ./
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RUN chmod +x docker-entrypoint.sh
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USER nextjs
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EXPOSE 3000
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ENV PORT=3000
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ENV HOSTNAME="0.0.0.0"
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# Start period: the entrypoint migrates before the server listens, and a
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|
# migration waiting out a held lock retries for up to about eight minutes.
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|
# Five retries: a pool saturated for a minute during a boot storm makes the
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|
# probe's 2 s database check miss once or twice without marking the container
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|
# unhealthy (docker-compose.yml explains the numbers).
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|
HEALTHCHECK --interval=30s --timeout=5s --start-period=10m --retries=5 \
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CMD wget --no-verbose --tries=1 --timeout=4 --spider http://127.0.0.1:3000/api/health || exit 1
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|
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ENTRYPOINT ["./docker-entrypoint.sh"]
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|
CMD ["node", "server.js"]
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