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Marc-André Bombeck
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Two daily series that both follow the season (temperature and blood pressure, daylight and sleep) correlated strongly with nothing between them. In a seeded simulation of such a pair the engine surfaced a finding in 58 % of 400-day runs and 30 % of 180-day runs, and a real next-day effect under the season came back with the wrong sign. Every daily pair now goes through seasonallyAdjustedPearson: a linear trend and one annual harmonic are removed from both series (trend only under 120 paired days), the residuals are correlated, and the p-value uses the Pyper-Peterman effective sample size. Shrinkage and the phrasing tier read the effective size too. BH-FDR and the effect floor are unchanged. Pairs too short to fit the basis are not tested. The weather channels are tested once over the mean of the day before and the day itself against the same day's outcome (lagDays 0), which pairs the overnight low with the night it shaped now that sleep is keyed on the wake day. Discovered pairs carry an additive nEff, the same-day templates are wired, and the matrix skips the weather read when the environment module is off. scripts/compare-correlation-findings.ts counts findings per account before and after, read-only, for the release-candidate dry run.
docs/ — internal reference + operator playbooks
The user-facing documentation lives at https://docs.healthlog.dev — that's the canonical surface for self-hosting guides, integration walkthroughs, AI-provider setup, and the doctor-report workflow.
The files in this directory are the internal operator playbooks, audit notes, and machine-readable specs that ship alongside the source:
api/— the OpenAPI 3.1 spec for the native-client subset (iOS DTO codegen target). Seeapi/README.mdfor the preview commands. Also home to the MCP-server contract:api/mcp-capabilities.md(tools, resources, prompts, write model) andapi/mcp-skills.md(building a connector / skill).ops/— operator runbooks: deploy, backup / restore, encryption-key rotation, password reset and account recovery, env checks, TLS pinning, data repair. These are what an operator reaches for during an incident.self-hosting/— horizontal-scaling notes (HEALTHLOG_PROCESS_TYPE=web|worker|all) and the deploy-pipeline recipe. Routine install steps stay ondocs.healthlog.dev. Includesself-hosting/mcp.md— enabling the off-by-default MCP connector and pointing Claude.ai / ChatGPT / Claude Desktop at it, andself-hosting/sso.md— OIDC SSO login: IdP setup, the identity-pinning security model,OIDC_ONLYconsequences, and the break-glass runbook. Alsoself-hosting/geolite2.md— bringing your own offline GeoLite2 databases viaGEOLITE2_DIRinstead of sending login IPs to a third-party lookup. Andself-hosting/account-sharing.md— letting one account on the instance open another's health record: the three access levels, the eight sections a grant can be narrowed to, managed profiles for somebody with no login and the guardians who look after them, what revocation does and does not undo, and which trust properties of the instance are unchanged by any of it.migration/— migration notes. Currently only v1.3 to v1.4; later releases are covered byCHANGELOG.mdand https://docs.healthlog.dev.integrations/— per-integration reference (Withings, Fitbit, Google Health, WHOOP, Apple Health, AI providers, data import).adr/— architecture decision records.security/— threat-model notes.diagrams/— architecture diagrams rendered through docs.healthlog.dev.releases/— release imagery.apple-store-connect-checklist.md— the iOS submission gate.codex-protocol-spec.md— Codex / ChatGPT OAuth protocol reverse-engineering notes.ui-guidelines.md— UI / a11y house style.
If you're a self-hoster looking to spin up an instance, start at https://docs.healthlog.dev or jump to the Quick Start in the project README.