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Three CONFIRMED findings from the campaign's feature-wiring audit + structural verification: - Sleep rendered nothing in the doctor-report PDF: the sleep section is default-on and the data layer reconstructs per-night SLEEP_DURATION rows, but DOCTOR_REPORT_VITAL_TYPES omitted SLEEP_DURATION, so the vitals table showed nothing (FHIR already emitted it). Added it to the allowlist with a minutes-to-hours conversion; corrected the stale 'intentionally excluded' comment. - Glucose had no doctor-report section toggle — it rendered whenever the global glucose module was on, with no report-level privacy control. The toggle actually already existed in the UI (with i18n) but was dead because the prefs fold dropped the key. Wired it end to end (glucose added to the prefs Zod schema + defaults, default-on to preserve behaviour; gated the render loop + the query). Also fixed a grouped-vs-flat prefs mis-detection: 'glucose' in GROUPED_SECTION_KEYS would have flagged flat blobs (incl. EMPTY prefs) as grouped and defaulted them all on. No migration (prefs is a JSON blob). - environment fed the coach with no exclusion: MODULE_EXCLUDED_SOURCES omitted it, so module-off still leaked audio_env/audio_headphone/audio_event/daylight/ skin_temp to the snapshot. Added, scoped exactly to the environment cluster's five sources. Regression test per fix.
docs/ — internal reference + operator playbooks
The user-facing documentation lives at https://docs.healthlog.dev — that's the canonical surface for self-hosting guides, integration walkthroughs, AI-provider setup, and the doctor-report workflow.
The files in this directory are the internal operator playbooks, audit notes, and machine-readable specs that ship alongside the source:
api/— the OpenAPI 3.1 spec for the native-client subset (iOS DTO codegen target). Seeapi/README.mdfor the preview commands. Also home to the MCP-server contract:api/mcp-capabilities.md(tools, resources, prompts, write model) andapi/mcp-skills.md(building a connector / skill).ops/— backup / restore + encryption-key-rotation playbooks. These are the runbooks an operator reaches for during an incident.self-hosting/— horizontal-scaling notes (HEALTHLOG_PROCESS_TYPE=web|worker|all) and the deploy-pipeline recipe. Routine install steps stay ondocs.healthlog.dev. Includesself-hosting/mcp.md— enabling the off-by-default MCP connector and pointing Claude.ai / ChatGPT / Claude Desktop at it, andself-hosting/sso.md— OIDC SSO login: IdP setup, the identity-pinning security model,OIDC_ONLYconsequences, and the break-glass runbook.migration/— release-by-release migration notes. Read the entry for the version you're upgrading from.audit/— per-release audit summaries archived for forensic traceability.apple-store-connect-checklist.md— the iOS submission gate.doctor-report.md— PDF generator design notes.codex-protocol-spec.md— Codex / ChatGPT OAuth protocol reverse-engineering notes.ui-guidelines.md— UI / a11y house style.
If you're a self-hoster looking to spin up an instance, start at https://docs.healthlog.dev or jump to the Quick Start in the project README.