Commit Graph
9 Commits
Author SHA1 Message Date
Marc-André Bombeck d9bbdb037a feat(documents): restore, bulk, usage endpoints and class-aware serving
POST [id]/restore clears the soft-delete tombstone inside the 30-day undo
grace; it answers 409 once the tombstone is purged (the undo window is
over) and 409 with meta.reason=duplicateExists when an identical live
document would collide with the live-dedupe index. Restoring an
already-live row is a no-op success, so a late undo toast never errors.

POST /bulk applies one action (setKind / linkEpisode / unlinkEpisode /
delete / restore) to up to 100 owner-scoped documents and reports per-id
outcomes — a partial failure never aborts the batch. GET /usage returns
usedBytes (tombstone-inclusive), the effective quota, the per-file cap,
and the accepted-extension list for picker accept attributes.

The serve route now derives its posture from the serving class: inline
types keep their true Content-Type and gain Content-Security-Policy:
sandbox as defence-in-depth for the PDF viewer context; attachment types
ALWAYS go out as application/octet-stream + Content-Disposition:
attachment. nosniff and private,no-store on both; RFC 5987 filename
handling unchanged; decrypt dispatches on the row codec and stays
fail-closed. Header matrix pinned per class in the route tests.

Tasks: W1-T8, W1-T9, W1-T10.
2026-07-07 11:05:29 +02:00
Marc-André Bombeck b76873ee1f feat(documents): rebuild upload and list on the vault contract
POST /api/documents/inbound now runs the policy layer end to end: bounded
read aborts at the admin-set cap (413 + meta.reason=fileTooLarge with the
limit), magic-byte classification (415 + unsupportedType), per-user quota
checked inside the insert transaction over every non-purged row —
tombstones keep counting, so deleted bytes are never invisible weight
(413 + quotaExceeded with the figures), sha256 dedupe (a same-bytes
re-upload answers 200 + meta.duplicate with the existing live row; the
partial unique index closes the race), an honoured Idempotency-Key, the
binary2 codec on write, and optional episodeIds[] pre-linking narrowed to
the caller's live episodes.

GET stops fetching the encrypted blob per row (omit: contentEncrypted —
a 50-row page dragged up to 50 × cap ciphertext before), learns kind[] /
episodeId / year facets on top of q/from/to, and returns conditionLinks +
servingClass on every DTO via one grouped link query (no N+1). PATCH gains
replace-set episodeIds with the same 404-shaped refusal for a foreign
episode. The extract path decrypts through the codec dispatcher.

The document-kind labels gain REFERRAL in all six locales.

Tasks: W1-T5, W1-T6, W1-T7.
2026-07-07 11:05:12 +02:00
Marc-André Bombeck eb1779d5c1 fix(documents): close v1.25.1 library QA findings (backend)
Default documentDate at store time. A store-only upload no longer lands
with a NULL filing date: when the client omits one, default it to the
upload day so the column is always set on a stored row. The library list
sorts, groups, and range-filters on the same effective date the UI shows,
so undated uploads no longer mis-sort under nulls-last, break date-group
headers, or fall through the range filter. The date stays user-editable
and may be cleared back to NULL via PATCH.

Block re-extraction once any fact is APPROVED. A partially-confirmed
document stays EXTRACTED, which the CONFIRMED guard does not catch;
re-extracting would delete the approved facts (severing the committed
record's provenance) and re-stage them as PENDING, letting a second
approval duplicate the committed lab / condition / medication. The
extract route now refuses with 409 (documents.inbound.alreadyPartlyConfirmed)
when approved facts exist; the user must finish reviewing or discard first.

RFC 5987-encode the original-download filename. The Content-Disposition
now carries both an ASCII filename= fallback and a filename*=UTF-8'' value
so a non-ASCII name survives intact; the stored set is inline-safe by
construction, so the dead attachment branch is removed.

Add a light per-user rate-limit backstop to the original-read, PATCH, and
DELETE routes (generous; self-DoS only — the routes are owner-scoped).

Lean the list counts: tally facts for the whole page in one grouped count
instead of materialising fact-id rows, and exclude REJECTED facts from
factCount. Extend the documentDate index with deleted_at to cover the
list scan. Document the deliberate plaintext-title PHI tradeoff at the
column and the store site.
2026-06-28 23:48:43 +02:00
Marc-André Bombeck 02df0d1f0e test(documents): satisfy strict null checks on mocked Prisma call args 2026-06-28 23:11:02 +02:00
Marc-André Bombeck cdd66b6620 Merge v1.25.1: documents library backend — store-without-AI, optional extract, edit, list
# Conflicts:
#	docs/api/openapi.yaml
#	src/lib/documents/store.ts
#	src/lib/openapi/routes/documents.ts
2026-06-28 23:08:54 +02:00
Marc-André Bombeck 05465a35a5 feat(documents): store-first library with optional extraction
Invert the inbound-documents surface from an OCR inbox into a document
library: a file can be stored without any AI provider, and extraction
becomes an opt-in action on top.

- Migration 0222: add `title` + `document_date` columns, a
  `(user_id, document_date)` index, the richer kind taxonomy
  (lab/imaging/prescription/insurance/vaccination), and a STORED status
  made the column default. The status enum is recreated so the new value
  can be set as the default within the migration transaction; kind values
  use ADD VALUE. Nullable columns, no backfill.
- POST /api/documents/inbound is now store-only: bounded multipart read,
  magic-byte MIME sniff, AES-256-GCM at rest, persisted as STORED with no
  provider/consent/budget call and no egress.
- POST /api/documents/inbound/[id]/extract carries the relocated
  extraction gauntlet (resolve provider, consent, rate-limit, budget, run,
  reconcile, stage facts) against an already-stored row; absent a provider
  it 422s the enhancement only and leaves the stored document intact.
- PATCH /api/documents/inbound/[id] edits title/kind/documentDate
  field-by-field, owner-scoped by session userId.
- GET /api/documents/inbound gains search, kind filter, documentDate
  range, sort, and keyset pagination via the parameter-bound query builder.
- Extend the validation schemas + DTO, regenerate the OpenAPI contract,
  and add route tests for the store/extract/edit/list paths.
2026-06-28 23:04:19 +02:00
Marc-André Bombeck 08314c7c09 feat(documents): view and download the original inbound document
The inbound-document store keeps the uploaded doctor letter encrypted at
rest (InboundDocument.contentEncrypted, AES-256-GCM), but there was no way
to read the original back — the decrypt helper had been dropped as unused.

- Restore decryptDocumentFromBytes in the document store, fail-closed on a
  bad / missing key id.
- Add GET /api/documents/inbound/[id]/original: owner-scoped (userId-narrowed
  query), module-gated, returns the decrypted bytes with the stored MIME
  type. A PDF / image is served inline so the browser can render it; other
  types download as an attachment. The filename is sanitised before it
  reaches the Content-Disposition header. The bytes are PHI — never logged,
  never served cross-user, and a decrypt error fails closed (500) rather than
  returning ciphertext. Cache-Control is private, no-store.
- Surface a 'View original' action in the document review screen.
- Document the route in the OpenAPI registry and regenerate the spec.
- Cover the route with a test: owner-scoped success, attachment fallback,
  404 for another user's document, and fail-closed on decrypt error.

i18n: viewOriginal across all six locales.
2026-06-28 20:33:29 +02:00
Marc-André Bombeck e3342dc19e fix(documents): encrypt staged extracted-fact PHI at rest
The inbound-document store encrypts the raw upload
(`inbound_documents.content_encrypted`) because it is sensitive clinical
data, but the per-fact staging columns persisted the same class of data in
the clear: `extracted_facts.data_json` held the transcribed clinical values
(diagnosis text, lab values, medication names, stated codes) and
`provenance_json` held the verbatim source span (up to 2000 chars copied
straight out of the report). The at-rest guarantee was defeated for staged
facts, which persist through PENDING and are retained after the decision.

Convert both columns to the AES-256-GCM `*_encrypted` BYTEA convention shared
with the note columns, going through the same Bytes codec. The upload and
fact-edit paths encrypt on write; the confirm path decrypts at commit time to
write into the normal structured stores, so the review-then-confirm flow is
unchanged. Reads are fail-closed (a bad key id throws).

Register both columns in the encrypted-columns registry and the key-rotation
script so a dropped legacy key cannot strand them (the guard test enforces
both). Migration 0220 swaps the plaintext JSONB columns for the encrypted
BYTEA columns; pre-confirm staged rows are ephemeral and cannot be
re-encrypted in SQL, so any left by a pre-release build are dropped rather
than retained as plaintext (their parent document keeps its encrypted
original).
2026-06-28 18:12:51 +02:00
Marc-André Bombeck 98ca0b9d61 feat(documents): extract structured facts from clinical documents
Ingest an uploaded doctor report / discharge letter through the existing
dedicated OCR/vision provider rails (the v1.22 document-scan provider/key,
reused — no new provider) and transcribe structured facts into staging.

The safety line is extract, never interpret: the prompt frames the document
as untrusted data to reproduce verbatim. Diagnoses map to Condition,
measured values to Observation, medications to MedicationStatement — with
STATED status only. A code survives only when the document writes it and its
system matches the resource (SNOMED/ICD-10 for a diagnosis, LOINC for a
value, RxNorm/ATC for a medication); nothing is inferred, no value is
range-flagged, no condition is linked to a medication. Every fact carries
per-field provenance and a confidence score; a fact below the confidence
floor fails closed — it cannot be approved until the user edits it.

Routes (apiHandler + Zod + session-narrowed userId, opt-in module-gated):
- POST/GET /api/documents/inbound — upload+extract (vision or local-OCR
  text), and list. The raw document is stored encrypted at rest.
- GET/DELETE /api/documents/inbound/[id] — review detail; soft-delete.
- PATCH .../facts/[factId] — correct a staged fact before approval.
- POST .../confirm — the only write path: approved facts flow into the
  labs / conditions / medications stores through their normal create paths;
  rejected facts are discarded; low-confidence facts are refused.
2026-06-28 16:57:06 +02:00