Commit Graph
43 Commits
Author SHA1 Message Date
Marc-André Bombeck c79fc6cc7b feat: lay down the day view and timeline contract
Land every file the day view, the timeline and life events share before
any of them is built, so the server, the day view and the timeline can be
built side by side without editing the same file (#613).

Schema and migration 0387: LifeEvent with a short category list, calendar
start and end dates, a day/month/year precision, encrypted title and note,
a soft-delete tombstone and an index for the per-user live list. Every new
column is annotated for the column-reader sweep. Life events travel in both
backup purposes with their two ends in one file, are wiped with the
account, and are registered for key rotation.

src/lib/day/contract.ts carries the constants and wire types for
GET /api/day/{date}, /api/day/index, /api/timeline, /api/timeline/readiness
and the life-event routes, free of Zod so the navigation chrome can import
it; the schemas beside it feed the routes and the published contract. The
Coach and MCP tool name get_day is reserved there, and life events are
listed as the one section no model ever sees.

The opt-in timeline module, its navigation entry, the day-section and
timeline-lane surfaces, the day and timeline query keys (evicted by every
record data bundle), and stub routes that answer 501 behind their
admissions. The four cross-section reads declare the whole record for now;
the life-event list is a profile read, and life events join the profile
sharing domain and its consent copy in all seven locales. The day,
timeline and lifeEvents message namespaces carry their base copy as
release-pending keys.

The aggregate bundle cap moves to 4400: the branch already measured 4365
against 4335, and the new copy adds 10 KB.
2026-10-08 13:03:37 +02:00
Marc-André Bombeck 900a5c4f1f perf: stop keeping folded samples and re-reading duplicates
The nightly folds soft-deleted every raw Apple Health sample they folded
into an hourly or daily stats row and kept it for 75 days. Nothing ever
read those rows as deletions; they only held a re-upload of the sample
off, and they were most of the measurements table and its indexes.

Ingest now refuses such a re-upload directly: a raw sample of a dense or
mean type, old enough to have been folded, whose hour or day a live
stats row covers, is a duplicate with reason folded_window. The batch
route and the Apple Health export import apply the same rule. With that
in place the dense retention and the daily-mean consolidation delete the
raw rows outright, and a new compaction-tombstone-purge job removes the
backlog: 5,000 rows a batch, one account at a time under the restore
lock, a short pause between batches, resumable because the predicate is
idempotent, queued at every boot and continuing itself while it makes
progress. A person's own deletions are never in its predicate. The sync
feed leaves compaction tombstones out and a restore does not write them
back; all three classify through the same function.

The batch route answers an exact re-sent sample without a transaction:
one read over the batch's sample ids, live or deleted, decides what the
reconciler would have decided, at the same point in the loop, so every
status, reason, counter and the cross-source merge stay as they were. A
batch of duplicates only no longer queues PR detection, a reminder sweep
or the detection audit row. Caches are evicted only for a foreground or
manual sync or a batch that wrote a hand-entered reading, and marked
stale otherwise; the targets cache follows the same split.

Also:
- POST /api/admin/maintenance/measurements queues VACUUM (ANALYZE) and a
  REINDEX INDEX CONCURRENTLY per index, largest first, on a connection of
  its own; it refuses while the purge runs, drops invalid leftover copies
  and stops at the first failed rebuild. Runbook in docs/ops.
- The pure volume queues keep their finished jobs for 96 hours instead
  of seven days, never less than the failure window plus a day.
- work_mem is set per app connection from DATABASE_WORK_MEM (16MB), also
  when the statement timeout is disabled.
- The PR-detection fallback tick re-scans only accounts whose readings
  or workouts changed since the previous tick.
- Type discovery for the status refill walks the live-rows index as a
  loose index scan instead of grouping every live row.
- The host metrics chart polls every five minutes, like its sampler.
- The batch route records per-type HealthKit arrivals.
2026-10-08 08:41:25 +02:00
Marc-André Bombeck 210becb28b feat(coach): lay down the reasoning, trail and memory contract
Add the shared contract the reasoning release builds on, with no change
to how a turn runs today.

- Schema: operator reasoning controls on app_settings (0376), the
  encrypted trail text on coach_messages (0377), and source,
  last_used_at and source_message_id on coach_facts (0378).
- Provider contract: CompletionParams.reasoning and onReasoning,
  CompletionResult.reasoning and providerState, AiMessage.providerState.
- Reasoning levels, thinking budgets and the background-job table in
  src/lib/ai/reasoning/levels.ts; coachPrefsJson.reasoning, absent
  meaning medium, salvaged field by field like every other pref.
- Stream: activity, memoryNote and planProposal frames, done.stop and
  done.withheldResults, result.interim, a compare chart kind, eight
  table refs, three more clarification kinds with an assumed choice,
  the change_assumption chip, and assumptions, activity, stop,
  memoryNote and planProposal on the provenance. Zod mirror, type
  parity and the native-client key rule cover every new frame.
- Chat request: memoryDecision and planDecision, parsed and not yet
  acted on.
- Stub contracts for the memory functions and the activity recorder,
  inert until their implementations land.
- Backup, restore and rotation carry the new columns; a fact's message
  reference is resolved against the restored messages like its
  conversation reference.
- Message keys for the trail, memory, plans, assumptions, replies,
  interim tables, comparison charts and reasoning settings in all seven
  locales, each reachable from a catalog and checked both ways.
2026-10-06 18:39:50 +02:00
Marc-André Bombeck 13ea849188 perf(backup): load the backup payload schema on first use
backupPayloadSchema is built when validations/backup.ts is evaluated and
holds about 12 MB of heap. The restore job, the stored-backup readers and
the export writer import that module, and they sit on the boot path, so
every server process built the schema at start whether or not it ever
touched a backup.

The schema version, the compatibility check and the per-section summary
move to validations/backup-summary.ts, which never builds the schema. The
call sites that validate a file (upload, restore, the summary and download
routes, and the streamed reader's element check) load backup.ts with a
dynamic import at that moment; everything else takes only types. The
OpenAPI registry keeps its static import, since only the spec generator
loads it.

After warm-up on a production build under --max-old-space-size=524, the
used heap drops by about 29 MB, and the schema no longer appears in a heap
snapshot. A structural test refuses a new static value import of the
module outside the registry.
2026-10-04 18:23:14 +02:00
Marc-André Bombeck b36190b2df Restore custom mood tags without mood entries
The account's own mood categories, tags and hidden set were written only
inside the restore's mood-entry branch, so a vocabulary set up before the
first entry did not come back. They are written whether or not the file
carries an entry.
2026-10-04 10:19:32 +02:00
Marc-André Bombeck 43a53255c9 Carry custom mood labels readable in a portable backup
The labels of the mood tags and mood categories an account created
travelled as the stored ciphertext in a portable file, so a restore onto
a host with another key refused the file or wrote labels nobody could
open. They now follow the cycle note: readable in a portable file, sealed
under the receiving host's key on restore, ciphertext kept only where
this host opens it and otherwise reported as moodLabelCiphertext.

The sealing helpers move to one module both sections share.
2026-10-04 08:31:11 +02:00
Marc-André Bombeck eada82f61e Derive a backfilled course in the account's time zone
The backfill and the restore of an older file read the creation day of
an end-only window in UTC while every reader of the window uses the
account's zone; both now use the account's zone (the default zone when
the stored one is unknown to Postgres). A window whose start lies after
its end, which the API refuses but older rows hold, becomes a one-day
course on the end day: every reader treated it as empty and ended, and
a swap would have invented expected doses. One shared rule
(courseFromWindow) serves the restore and the course writer.
2026-10-03 23:36:08 +02:00
Marc-André Bombeck 1494409209 Merge remote-tracking branch 'origin/main' into wip/v140-H
# Conflicts:
#	messages/de.json
#	messages/en.json
#	messages/es.json
#	messages/fr.json
#	messages/it.json
#	messages/ko.json
#	messages/pl.json
#	src/__tests__/sharing-surface-guard.test.ts
#	src/__tests__/v137-wave-zero-fixtures.test.ts
#	tests/integration/sharing-manage-handler-matrix.test.ts
2026-10-03 22:52:49 +02:00
Marc-André Bombeck a14174fe4d Let a medication have several courses
A medication taken now and then (#1024) keeps one row and gains course
rows: calendar spans, both ends inclusive, an optional encrypted note, no
schedule or dose of their own. Courses never overlap and every course but
the latest has ended, so the latest course is always the one the
medication's startsOn/endsOn project. src/lib/medications/courses.ts is
the only writer of those two columns for a medication with courses; it
writes under a per-medication advisory lock and re-projects in the same
transaction, so reminders, the next-due line and intakeActionable keep
reading the columns and stay right.

- Migration 0368 adds medication_courses and backfills one course per
  medication window (an end-only window starts on the creation day, or
  on its end day when that lies earlier); a medication without a window
  stays course-less. Idempotent, data-preserving.
- GET/POST /api/medications/{id}/courses and PATCH/DELETE
  .../courses/{courseId} (owner-only); create seeds the first course
  from a window; the medication PUT edits the latest course and refuses
  a window that would break the rules (medications.course.*).
- List, detail, create and update carry courses, courseCount,
  previousCourseEndedOn and canStartCourse, resolved on the server.
- Compliance expands over the span of all courses and drops the slots
  between them; every compliance read selects the courses. A rolling
  cadence is not anchored by an intake from a previous course.
- The card names the last course's end and the running course's number;
  the detail Lifecycle group lists the courses with start, edit and
  delete. The Coach compliance block, the MCP resource, the doctor
  report window and table, the clinician view and FHIR (one
  MedicationStatement per course with effectivePeriod and status) read
  the courses.
- Backup carries courses per medication and the restore writes them and
  re-projects; an older file derives the one course its window
  describes. Wipe plan, encrypted columns, rotation and OpenAPI follow.
2026-10-03 22:39:25 +02:00
Marc-André Bombeck 4cb8118802 Let a person name their own medication categories
A medication can be filed under a category the person named, next to the
built-in ones (#1041). The labels live in medication_category_labels,
encrypted at rest, capped at 20 per account; a medication filed under one
carries its custom:<uuid> key in the category column.

- GET/POST /api/medications/categories (POST idempotent, 30/min per actor,
  admitted at MANAGE like the cycle symptom vocabulary) and owner-only
  PATCH/DELETE /api/medications/categories/{key}. DELETE moves every
  medication filed under the category to OTHER in the same transaction
  and answers movedCount.
- category is widened to a built-in value or custom:<uuid> on the wire,
  the create and update bodies refuse a key that is not the caller's
  (422 medications.category.unknown), and list, detail, the insights
  medication tiles and the MCP medications resource carry categoryLabel.
  A key with no owned label reads as OTHER and is counted on the event.
- The wizard's class step lists the person's categories under the
  built-in rows with an inline add row; the list page gains a category
  filter (session only) and a manage sheet for rename, hide and delete.
- Backup carries customMedicationCategories (decrypted labels) and the
  restore writes them before the medications; wipe plan, encrypted
  column registry, rotation script, sharing guards and OpenAPI follow.
2026-10-03 21:38:03 +02:00
Marc-André Bombeck d6571c4e9c feat(symptoms): add person-defined symptoms and timestamped occurrences
A symptom of one's own ("aura", "headache") is a definition with an
encrypted name and an icon from the cycle custom-symptom allowlist; each
occurrence carries a time, a 0-10 intensity (the pain score's scale), an
optional encrypted note and an optional link to one of the record's open
illness episodes. Both ride the illness module: every route answers
illness.disabled when it is off.

- Migration 0369 (idempotent): symptom_definitions and symptom_events,
  intensity CHECK 0-10, episode link ON DELETE SET NULL.
- /api/symptoms/definitions{,/[id]} and /api/symptoms/events{,/[id]}:
  eight active definitions per record (a hidden one frees its slot,
  showing it again re-checks), hide or purge, events create/list/edit/
  delete, a new link must name an open episode of the same record
  (422 symptoms.episode.notOpen). Error group symptoms.*.
- Sharing: reads at READ, logging an occurrence at WRITE, defining and
  editing at MANAGE; C1/C3/C4 audit details; frozen lists, the handler
  matrix and the activity verbs updated.
- Both encrypted columns registered and rotated; both models in the wipe
  plan; both carried at both backup ends with occurrences nested in their
  definition, plaintext in a portable file and ciphertext in a recovery
  file, and a link to an episode the file lacks dropped and named
  (symptomEpisodeReference).
- OpenAPI regenerated.
2026-10-03 21:13:45 +02:00
Marc-André Bombeck 350c646463 Adopt the medication category table into the schema
The clinical category lived in a side table the app created at runtime,
after migration 0004 had dropped it as orphaned. It is now the
MedicationCategoryAssignment model. Migration 0368 creates the table
IF NOT EXISTS with the runtime DDL, so an existing table converges with
its rows untouched (verified with prisma migrate diff against a database
holding the runtime table and against a fresh one).

The helpers keep their names and run on the Prisma delegate; the runtime
CREATE TABLE and the pre-transaction ensure call in the restore are gone.
The backup plan judges the table as a schema model (backed up, two-ended,
seeded in the round trip) instead of under RAW_SQL_TABLES, which is now
empty; its guard proves its matcher on a fixture string instead.
2026-10-03 20:45:02 +02:00
Marc-André Bombeck 7abaa25c14 feat(backup): export the account settings and restore them onto the account
Both backup purposes now carry an accountSettings section. The restore writes
it to the account being restored inside the same transaction, names every
refused value under the new accountSetting skip catalogue, and re-warms the
stored texts after the transaction when a unit preference changed, the way the
unit settings routes do. A file without the section leaves the account row as
it is, which is how every older backup restores. The instance settings
restore stays its own opt-in.
2026-10-01 13:04:41 +02:00
Marc-André Bombeck 3f5bcbd441 fix(backup): carry four columns the restore was dropping
A column-level round trip over every two-ended model found four values
that left with the export and came back empty or re-stamped:

- MenstrualCycle.absorbedIntoId: the disaster-recovery file carried the
  folded, soft-deleted start but not the start that absorbed it, so after
  a restore removing the absorbing start could no longer bring the folded
  one back. Carried in the disaster-recovery arm and written back only
  when the file carries the start it names.
- Workout.externalSourceVersion: the source's version marker, stored so
  the sync can replay it unchanged, was in neither end. Carried beside
  metadata in the disaster-recovery arm.
- NutrientIntakeDay.externalSourceVersion and createdAt: neither was
  selected, so a restored day lost its source marker and its first-arrival
  time. Carried in both arms.

Files written before this change parse as before; every new field is
optional on the way in.
2026-10-01 11:17:44 +02:00
Marc-André Bombeck add6d1fadc fix(restore): order the restore and the consolidation passes by one lock
A restore on a freshly booted instance failed its clearing step with a
deadlock (40P01) while the boot-time step consolidation was folding the
same account. A consolidation day updates or mints the day's total and
then soft-deletes the day's per-sample rows; the restore deletes every
reading of the account in one statement. When the restore reached a
day's samples before its total, each side held what the other needed
next.

The restore already took an advisory lock per account before its first
delete. Every day transaction of the passes built on runConsolidation
(step and mean consolidation, the per-sample cumulative drain, the dense
intraday retention) now takes the same lock in shared mode as its first
statement. A restore that starts mid-day waits for that day to commit;
a day that would start while a restore runs is refused at once, and the
pass leaves that account for its next run instead of folding rows the
restore is about to replace. The passes still share the lock with each
other.

A new integration test builds the lock order that deadlocked, with a
row trigger holding the consolidation on the day's total while the
restore starts; before this change the consolidation was cancelled with
a deadlock. A guard test requires every transaction in a pass on
runConsolidation to open with the shared lock.

Refs #1031
2026-09-28 00:34:11 +02:00
Marc-André Bombeck 206da07e8c Merge branch 'fix/meds-ended-and-mental-health' into release/v1.39.4 2026-09-27 14:18:09 +02:00
Marc-André Bombeck 6f37cbdb23 fix(backup): carry each medication's category through backup and restore
The clinical category a person picks for a medication lives in a side table
created at runtime, outside the schema. The backup builder and the restore
only walk schema models, so no backup ever carried it: after a restore every
medication read as "Other".

Both backup formats now carry the category inside its medication, and the
restore writes it back in the same transaction as the medication. A file
from before this change restores as before; a category this server does not
know reads as Other instead of refusing the file.

The backup plan gains a list for tables created with raw SQL, and a check
that every such table in the source either maps to a schema model or has a
verdict there, so the next one cannot drop out of backups unnoticed.
2026-09-27 14:17:42 +02:00
Marc-André Bombeck c7e53176c1 Merge branch 'fix/v1394-review-correctness' into release/v1.39.4 2026-09-27 14:00:04 +02:00
Marc-André Bombeck eda87fd4a7 fix(sync): expire delta cursors issued before a restore or a data wipe
A restore writes rows back with their original updatedAt, behind every
paired client's watermarks, and removes rows without leaving tombstones.
A client that kept its cursor would miss both on its next incremental
pull. The same holds after the person deletes all their data.

`users.sync_reset_at` (migration 0363) records when the record was last
replaced: the restore stamps it as its last write and again right after
the commit, the per-account and the admin wipe stamp it inside their
transactions. Cursors now carry the time they were issued, and
/api/sync/changes answers its existing `cursorExpired` to a cursor issued
before the reset, or one without an issue time on an account that has
one. The comparison is on the issue time, because after a restore a
freshly drained cursor still carries old watermarks.
2026-09-27 13:46:38 +02:00
Marc-André Bombeck daf386fe7f fix(backup): use the renamed after-transaction allowance for the chart rebuild 2026-09-27 13:32:58 +02:00
Marc-André Bombeck 5173049130 Merge branch 'release/v1.39.4' into fix/v1394-review-correctness 2026-09-27 13:27:59 +02:00
Marc-André Bombeck fc13b9de5c fix(restore): skip expired tombstones and give the chart rebuild its own limit
A restore now leaves out measurement tombstones deleted longer ago than
the tombstone retention. The nightly purge removes exactly those rows,
the delta feed answers cursorExpired for every cursor that could still
be served one, and the consolidation repairs look only inside the same
horizon. Younger tombstones keep their readers (a lagging paired client,
the undo of a recent delete, the repairs, the duplicate guard on
re-uploaded samples) and are written as before. The backup file is
unchanged. On a seeded account of 1.89 million readings whose 1.68
million tombstones were past retention, the restore on a slowed database
took 5.4 min instead of 15.

The rollup fold after the commit rebuilt five years of buckets under the
60 s request statement limit and could be dropped on a slow disk, leaving
the charts empty until the next boot. `recomputeUserRollups` takes a
`statementTimeoutMs` that scopes each aggregate and persist transaction
with SET LOCAL, and the restore passes its after-commit allowance.

Fixture tombstones in two round-trip tests were dated in July 2026 and
had aged past the retention; they are now relative to the run.
2026-09-27 13:21:18 +02:00
Marc-André Bombeck 874d02294e fix(backup): let the restore job's budget admit large accounts
A restore is refused before it deletes anything when its transaction limit
would run past three quarters of the job's expiry. At two hours that refused
a same-size replacement of about four million readings. The expiry is now six
hours, which admits ten million over ten million; a dead worker still frees
the account within minutes through the heartbeat, so the longer expiry does
not hold an account longer.

The refusal now names both counts, the readings in the backup and the ones the
account holds now (removed readings included until the nightly clean-up),
since clearing the latter costs time too.
2026-09-27 13:13:50 +02:00
Marc-André Bombeck e0b4f3c427 fix(restore): size the restore budget by the rows written, and keep test housekeeping off the short limit 2026-09-27 11:57:37 +02:00
Marc-André Bombeck 93b6c086b4 fix(restore): let a large restore outlast the request statement timeout
A restore of an account with 1.9 million readings, most of them deleted
by the nightly consolidation and still awaiting the purge, was cancelled
in its clearing step: `DELETE FROM measurements` ran past the 60 s
statement timeout every pooled connection carries, and the whole restore
rolled back with a message that named no cause (#1031).

Most of that statement was not the delete. Two columns point into
`measurements` with ON DELETE SET NULL and had no index, so Postgres
scanned `personal_records` and `ecg_recordings` once per deleted reading:
38 of 40 s on a seeded account with 300 personal records. Migration 0362
indexes both, which also speeds up the tombstone purge and account
deletion.

The restore transaction now sets its own statement and idle-in-transaction
limits to the transaction budget with SET LOCAL, and the budget counts
the rows the account holds as well as the rows the file carries. A
rolled-back restore names what the database refused it over (timeout,
lock, constraint, storage, connection, other) on the job row, the
console, the audit row and the wide event.
2026-09-27 11:24:41 +02:00
Marc-André Bombeck 4409529c89 Merge branch 'fix/backup-rotation-and-deletion' into release/v1.39.3
# Conflicts:
#	docs/api/openapi.yaml
#	src/lib/jobs/apple-health-import-worker.ts
2026-09-26 21:48:20 +02:00
Marc-André Bombeck 405c996b6a fix(backup): refuse a restore that needs a dropped key or reaches into another account
A backup carries every encrypted column as the stored ciphertext, and a
restore writes it back verbatim. Key rotation re-seals the stored copy's
envelope but cannot reach inside it, so a copy taken before a rotation
still needs the retired key. Without it the restore went through and
left rows no reader can open.

The restore, the restore preview, the admin upload and the monthly
restore drill now collect the key ids of every inner ciphertext value,
hold them against ENCRYPTION_KEYS and decrypt one value per key. A
missing key, or an id configured with different key material, is
refused before anything is deleted, with the key id named. The restore
status and the preview say which key to put back.

The restore also checks, inside its transaction, that it added no
reference from the account's rows to rows another account owns. The
check is derived from the schema's foreign keys rather than written per
section, so the tag and category upserts keyed on a global key are
covered along with every link table. The illness parent update is
scoped to the owner as well.

The off-host listing now follows every page: the first page held only
the oldest dates, so the drill could read an old object and report the
chain as stale.
2026-09-26 19:22:03 +02:00
Marc-André Bombeck 1eac05b454 fix(documents): key imports by source instance, keep a token on its origin, and harden the import path
- Source keys carry the normalised origin of the Paperless-ngx or Papra
  they came from (source_instance on the document, the alias and the
  purge ledger; unique NULLS NOT DISTINCT). A key stored without one
  (v1.39.2 imports) matches any instance of its system, and a lookup
  without one matches any stored instance. The upload route, the lookup
  route and the import script accept or send it; backups carry it.
- Saving a connection reuses the stored token only for the same origin;
  a new origin needs the token again (422 tokenRequired).
- Document ids are checked against what each system issues (Paperless
  digits, Papra [A-Za-z0-9_-], never . or ..) before any URL is built;
  the Papra organization id likewise.
- Paperless API 9 filters dates on created__gte / created__lte, in the
  picker and the script. A search page the local re-check empties reads
  on, up to five source pages. Tags are read past the first 250.
- The import's key pre-check uses the lookup allowance, a failed fetch
  no longer charges the upload allowance, and one import per key runs at
  a time under an advisory lock, so a double click downloads once.
- Reading and deleting one's own connection works with the documents
  module off and the operator list unset.
2026-09-26 14:20:17 +02:00
Marc-André Bombeck 39b56ee4e2 Merge branch 'fix/backup-chunked-storage' into release/v1.39.2 2026-09-26 01:49:22 +02:00
Marc-André Bombeck 8ad4610370 fix(backup): make rotation, concurrent writes and old rows safe for pieces
Key rotation re-sealed a single-value backup in place, which holds the
stored string, its bytes, the plaintext and the new ciphertext at once; a
copy can be over a hundred megabytes and the in-app rotation walked 25 of
them per page, enough to run a 1 GB container out of memory. Rotation now
converts each such copy into pieces under the active key instead, one row
at a time. The ~hlgcm1. stream of v1.38.6 to v1.39.1 is read a megabyte
at a time with its tag checked at the end, inside one transaction, so a
copy that fails the check is left untouched; the copy keeps its date. The
scan reads only the first characters of each value. Measured on a copy of
a 2.6 million-reading account (126 MB stored): converted in 25 s with the
heap flat at 57 MB under a 200 MB limit, where re-sealing in place ran out
of heap.

The weekly and manual backup leave an account alone while a restore of
its current copy is queued or running, and count it as skipped, not
failed. A reader whose copy is replaced mid-read answers 409
backup_changed, "replaced by a newer one while it was being read", rather
than the undecryptable error; a restore rolls back with the same code.

Pieces are sealed with a fixed associated-data label, so a value the same
key sealed for another purpose never opens as a piece; rotation re-seals
under the same label. A row holding both a single value and pieces, which
only an older release writing after a downgrade produces, is refused with
a message saying so, and the next weekly run replaces it. Rotation treats a
row deleted between its read and its write as gone rather than an error.
2026-09-26 01:49:02 +02:00
Marc-André Bombeck d5a39603ca Merge branch 'fix/backup-chunked-storage' into release/v1.39.2 2026-09-26 01:03:25 +02:00
Marc-André Bombeck 1e09f30eff fix(backup): store a backup in sealed pieces instead of one value
A stored backup was one value in data_backups.data. v1.39.1 wrote it a
piece at a time but still joined the pieces into that one value, and one
value has to pass through the app whole, so a copy was capped at a fifth of
the heap: 105 MB in the default 1 GB container. An account with 1.75
million readings is past that and could not be backed up at all (#1031).

A copy is now kept as ordered pieces of about a megabyte in the new
data_backup_chunks table (migration 0352). Each piece is sealed on its own
with AES-256-GCM, and its sealed header names the copy (a random stream id
kept on the row), its position and whether it is the last. A reader checks
every piece before it releases a byte, so a piece that is missing, moved,
altered, taken from another copy, or a copy cut short is refused with
backup.payload.undecryptable before a restore deletes anything, and the
second read during the restore checks each piece again.

The write is one transaction, so the previous copy stays whole and readable
until the new one commits. Pieces are written through the model API: a raw
query with a large parameter is kept alive by Prisma's query plan cache,
which left 160 MB of heap behind per hundred one-megabyte inserts.

Restore, preview, download, the restore job and the admin list read both
forms; copies written before this change keep their single value and still
restore. The heap-derived limit is gone. The one limit left is on storage,
BACKUP_MAX_STORED_MB (default 2048), and its message names the setting. Key
rotation covers the pieces, the wipe and account deletion take them with
their backup, and the backup plan lists the table as not carried.

Measured on an account of 2.6 million readings in a 1 GB container with web
and worker in one process: backup 87 s, 97 MiB in 96 pieces, preview 20 s,
download 25 s, restore 264 s with every reading back exactly, peak 567 MiB,
no restart.
2026-09-26 01:02:48 +02:00
Marc-André Bombeck bec79879b5 Merge branch 'feat/document-import-token' into release/v1.39.2 2026-09-26 00:22:43 +02:00
Marc-André Bombeck fabd691128 fix(backup): keep an empty provenance empty on restore
A current disaster-recovery backup writes aggregationProvenance for every
measurement, null included. The restore treated null like a missing field
and marked every Apple Health stats: row without a provenance as
LEGACY_UNKNOWN, which is meant only for backups too old to carry the field.
The nightly daily-mean fold writes exactly such rows, so on a large Apple
Health account a restore changed tens of thousands of readings it was
supposed to put back as they were (#1031).

Only an absent field now takes the legacy path.
2026-09-25 22:40:08 +02:00
Marc-André Bombeck 10a1c3ca2e fix(documents): keep every import key deleted, answer re-sends cheaply
A keyed upload that matched a stored document by its bytes never recorded
its key, so deleting that document let the next import run store it again.
Such keys are now kept as aliases of the document, the source-key check
reads them, and the purge carries them into the ledger with the row's own.

A source key may ride the query string and is then answered before the
body is read or the hourly allowance charged; an upload answered as a
duplicate hands its slot back. GET /api/documents/inbound/source answers
whether a key is held, under the same documents:write scope, so an
importer can skip a download.

aiRead=defer is stored on the row. The summary catch-up, the summary job
and lab auto-staging skip such documents until an explicit Read with AI
or Generate summary clears the marker; backup and restore carry it.

A documents:write caller no longer sees the quota figures on a full vault.

Refs #1038
2026-09-25 22:35:11 +02:00
Marc-André Bombeck 100412a3a6 Merge branch 'feat/condition-body-site' into release/v1.39.2 2026-09-25 22:09:01 +02:00
Marc-André Bombeck 14f0fc4d4f feat(body-sites): record a body site on conditions and add a body-site view
A condition (illness episode) can carry where on the body it sits, in the
person's own words and encrypted at rest, plus an optional side (LEFT,
RIGHT, BOTH). Same enum, codec and reasoning as the procedure's site.

- migration 0354: two nullable columns on illness_episodes, reusing the
  laterality type from 0349
- create and edit accept bodySite and laterality; on PATCH an absent key
  keeps the stored value, so an edit from the shipped iPhone app, which
  never sends either field, leaves them untouched
- GET /api/body-sites: the sites the record holds across visits and
  conditions, folded after the decrypt and bounded per kind; with site
  (and laterality) the visits and conditions there, one hop to their
  documents, lab results and visits. Read in the profile section;
  conditions only under an illness grant with the module on, and links
  into ungranted sections come back as unlabelled placeholders
- the link service reads document and visit links from the condition's
  end of the two existing tables
- /checkups gains a Body sites tab; the visit and condition forms share
  one body-site field pair that suggests sites already used; a
  condition's page links its site into the view
- the doctor report, the clinician page and the MCP doctor-visit summary
  name the site on conditions; the Coach illness block carries it
  sanitised, and MCP get_illness_recovery returns it fenced
- backup and restore carry both fields in both file kinds; the site is
  registered as ciphertext and rotates with the key
- i18n in all seven locales, OpenAPI regenerated

Refs #1025
2026-09-25 21:55:14 +02:00
Marc-André Bombeck 55a32ff7d1 feat(documents): add a document upload token for imports from other systems
A narrow `documents:write` token, minted cookie-only at
`POST /api/tokens/documents` and accepted by the vault upload route alone.
A scoped caller draws on its own hourly bucket per token
(`DOCUMENT_UPLOAD_LIMIT_PER_HOUR`, default 120) and gets a receipt
`{ id, duplicate }` instead of the stored row.

Uploads take optional `sourceSystem` / `sourceId` fields. The source key is
unique per account across live and deleted documents, and the tombstone
purge carries it to a small ledger, so re-sending a document the owner
deleted answers 200 `deleted: true` and stores nothing. `aiRead=defer`
indexes locally and skips the summary and lab staging.

The detail sheet shows where an imported document came from; backup and
restore carry both fields; Delete All Data clears the ledger.

Refs #1038, #938
2026-09-25 21:48:04 +02:00
Marc-André Bombeck e03cf7c2c8 Merge branch 'feat/medication-record-only' into release/v1.39.1 2026-09-25 09:37:27 +02:00
Marc-André Bombeck b4c2706ec9 feat(medications): keep a medication as a record without tracking intake
A per-medication trackIntake flag (migration 0351, default on for every
existing and new row). With it off the dose, dates and schedule stay stored,
but nothing derives a due dose from them: the reminder worker, the manual
reminder check, the today projector, the auto-miss pass, the low-stock pass,
the doses card, the today list, the outstanding-dose badge, compliance and
its heatmap, the doctor report, the Coach, the BP-status gate, insights,
targets, achievements, the efficacy view and the MCP schedule tool all skip
it.

The medication wire serves such a medication with schedules: [] and the
stored rows in an additive recordedSchedules field, so a client that arms
local reminders from schedules stays silent without an update. Switching
tracking off or back on archives a schedule revision at that instant, the
untracked stretch with an empty payload, so it never counts as missed and
the projector does not put a dose from before the switch back on the card.

A structural guard freezes the set of schedule readers: each one filters on
the flag, derives from dueSchedules, shapes the wire with scheduleWireFields,
or is allowlisted with the reason it derives nothing due. The flag travels
through backup, restore and the medication CSV export.
2026-09-25 08:57:10 +02:00
Marc-André Bombeck 4897752c3c fix(backup): date a restored medication by its earliest record when the file has no date
Portable files exported before v1.39.1 carry no creation date for a
medication, so the restore stamped the restore time. The dose history reads
that date as the day the medication began to exist, and every miss before
it, including the day before the restore, dropped out of the record.

When the file has no creation date, the restore now uses the earliest thing
the file records for the medication: its first dose (scheduled, taken or
written), the start of its first schedule revision, its course start, its
first pause, dose change or side effect, and never a date after the restore.
A file that records nothing about the medication keeps the old default.
2026-09-25 08:53:38 +02:00
Marc-André Bombeck 3abbad048e fix(backup): never run a restore again after its data committed
A restore commits its transaction and then rebuilds the chart tiers. A
worker that stopped during that rebuild left the job running with a stale
heartbeat, and the boot sweep and the admission check treated it like any
interrupted job: the sweep queued it again, so the second run deleted and
re-wrote the account and lost whatever was written in between, and a second
interruption closed it with "rolled back, nothing was changed", which was
false.

The job now records `committedAt` (added to migration 0347, which has not
shipped) and awaits that write before the rebuild starts. The sweep and the
admission check close a committed job as `failed_after_commit`, never queue
it again, and evict the account's caches. The rebuild itself is left to the
nightly and boot passes that already rebuild missing tiers.

The module comment now says what an interrupted restore does (restarted
once, then failed) and what happens to other writes while a restore runs:
new rows are written at once, updates to rows the restore already deleted
wait on their lock until it commits or rolls back.
2026-09-25 08:49:45 +02:00
Marc-André Bombeck 47e9f7e81c feat(backup): run a restore as a background job with progress
Restoring a large account was one request: 94 s for 1.25 million readings.
A reverse proxy that cuts a request at 60 s (nginx's default) showed the
operator an error for a restore that went on to finish on the server.

The restore request now checks the typed confirmation, that the backup
exists and that its stored copy opens, admits one job for the account and
answers 202 with its id. The `backup-restore` queue runs the restore and
records its phase, counts and outcome on a `backup_restore_jobs` row
(migration 0347), which `GET /api/admin/backups/restores` and
`GET /api/admin/backups/restores/{id}` read back.

What a restore checks and writes is unchanged. The body moved from the
route into `restoreBackup` (src/lib/export/restore-backup.ts): every
refusal still happens before the first delete and the replacement is still
one transaction, so a failure part-way leaves the account as it was. While
it runs the account keeps showing its current data, and other writes are
neither refused nor held, as before.

- One restore per account: a partial unique index admits one queued or
  running job, and a second request gets 409 `backup.restore.active` naming
  the running job. A per-account advisory lock inside the transaction holds
  even if a worker thought gone is still writing.
- Time budget: the job's expiry is two hours and a file whose transaction
  limit would run past three quarters of it is refused before anything is
  deleted (`jobDeadline`, beside `jobBudget`).
- Resuming: the job writes a heartbeat every two seconds. A boot sweep
  queues a job whose worker stopped again from the start, at most twice,
  then fails it as interrupted. The admission check releases an abandoned
  job so it never holds the account's slot.
- The staged file is the stored `DataBackup` row, already encrypted at
  rest. It stays whatever the outcome, so a retry needs no new upload. The
  job records a digest of the copy and refuses one that was replaced while
  it waited.
- Failures carry a stable code and a sentence that says what to do.
- The console follows the job: phase and counts while it runs, the outcome
  after, and after a reload it finds the job again from the server. A poll
  that fails on the network is never shown as a failed restore. A web
  process separate from the worker evicts the account's caches when it
  first reports the restore finished. The success line goes through the
  outcome module, so an empty file is not drawn as a tick.

The model is registered in the backup plan (not carried) and the wipe plan
(wiped with the account); the queue in the maintenance registrar, the
subsystem surface and the job-fact allowlist; the new code in the error
catalogue; the routes in the OpenAPI contract. The tests that pin restore
semantics now drive the real route and the real job through one helper, and
`backup-restore-job.test.ts` pins the asynchronous contract itself.
2026-09-25 07:39:06 +02:00