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feat(insights): correlation maths for B3 hypotheses
Add `src/lib/insights/correlations.ts` with three pre-defined
hypothesis runners (BP × medication compliance, mood × resting
pulse, weight × weekday) plus pure Pearson + one-way weekday-ANOVA
helpers. Each runner gates the surface on n >= 14 paired rows AND
p < 0.05; below the bar a typed `insufficient` result lets the
card render an EmptyState rather than a misleading pattern.
Interpretations stay conservative ("a pattern worth watching" —
never "X causes Y"). 95 % confidence intervals come from a Fisher
z-transform on r and a discrete band-from-eta-squared mapping for
the weekday case. No new dependencies — the t-distribution +
F-statistic p-value approximations are inlined (Wilson-Hilferty +
Abramowitz-Stegun).
16 unit tests cover positive / negative / no-correlation / under-n /
non-significant / no-variance branches and the Monday-outlier
weekday flag.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
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import { describe, it, expect } from "vitest";
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import {
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pearson,
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weekdayAnova,
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correlateBpCompliance,
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correlateMoodPulse,
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correlateWeightWeekday,
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MIN_PAIRED_N,
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MAX_P_VALUE,
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} from "../correlations";
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/**
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* v1.4.20 phase B3 — correlation discovery.
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*
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* Three pre-defined hypotheses are surfaced as `<CorrelationCard>` rows.
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* Quality bar is non-negotiable: n >= 14, p < 0.05. Anything below
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* returns `status: "insufficient"` so the card paints an EmptyState.
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*/
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function makeDate(daysAgo: number): Date {
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return new Date(Date.now() - daysAgo * 24 * 60 * 60 * 1000);
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}
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// ── pearson() ───────────────────────────────────────────────────────
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describe("pearson", () => {
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it("flags too_few_pairs below the minimum n", () => {
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const xs = [1, 2, 3];
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const ys = [1, 2, 3];
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const result = pearson({ xs, ys });
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expect(result.status).toBe("insufficient");
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if (result.status === "insufficient") {
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expect(result.reason).toBe("too_few_pairs");
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expect(result.n).toBe(3);
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}
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});
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it("flags no_variance when one column is constant", () => {
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const xs = Array.from({ length: 20 }, (_, i) => i);
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const ys = Array.from({ length: 20 }, () => 7);
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const result = pearson({ xs, ys });
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expect(result.status).toBe("insufficient");
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if (result.status === "insufficient") {
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expect(result.reason).toBe("no_variance");
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}
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});
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it("returns r near +1 for a perfect positive linear relation", () => {
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const xs = Array.from({ length: 20 }, (_, i) => i);
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const ys = xs.map((x) => 2 * x + 5);
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const result = pearson({ xs, ys });
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expect(result.status).toBe("ok");
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if (result.status === "ok") {
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expect(result.r).toBeCloseTo(1, 2);
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expect(result.pValue).toBeLessThan(0.001);
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}
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});
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it("returns r near -1 for a perfect negative linear relation", () => {
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const xs = Array.from({ length: 20 }, (_, i) => i);
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const ys = xs.map((x) => -3 * x + 10);
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const result = pearson({ xs, ys });
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expect(result.status).toBe("ok");
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if (result.status === "ok") {
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expect(result.r).toBeCloseTo(-1, 2);
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expect(result.pValue).toBeLessThan(0.001);
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}
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});
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it("returns r near 0 for noise, with p above the surface threshold", () => {
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// Deterministic noise (no Math.random) so the test is reproducible.
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const xs = [
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0.1, 0.5, 0.9, 0.2, 0.7, 0.4, 0.6, 0.3, 0.8, 0.05, 0.95, 0.15, 0.85,
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0.55, 0.25,
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];
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const ys = [
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0.5, 0.1, 0.7, 0.3, 0.2, 0.9, 0.4, 0.6, 0.05, 0.95, 0.85, 0.55, 0.25,
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0.45, 0.65,
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];
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const result = pearson({ xs, ys });
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expect(result.status).toBe("ok");
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if (result.status === "ok") {
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expect(Math.abs(result.r)).toBeLessThan(0.5);
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// Either p is high (no support) or low — but for these specific
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// jittered values we expect no significance.
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expect(result.pValue).toBeGreaterThan(MAX_P_VALUE);
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}
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});
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});
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// ── weekdayAnova() ──────────────────────────────────────────────────
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describe("weekdayAnova", () => {
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it("flags too_few_pairs when total n < 14", () => {
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const result = weekdayAnova([
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{ weekday: 0, value: 80 },
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{ weekday: 1, value: 81 },
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]);
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expect(result.status).toBe("insufficient");
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if (result.status === "insufficient") {
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expect(result.reason).toBe("too_few_pairs");
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}
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});
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it("flags no_variance when every weekday has identical values", () => {
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const data = Array.from({ length: 21 }, (_, i) => ({
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weekday: i % 7,
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value: 80,
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}));
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const result = weekdayAnova(data);
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expect(result.status).toBe("insufficient");
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if (result.status === "insufficient") {
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expect(result.reason).toBe("no_variance");
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}
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});
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it("flags Monday outlier when Monday weights spike", () => {
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// Three weeks of "boring" weekdays (~80 kg) plus a Monday spike (~84 kg).
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const data: Array<{ weekday: number; value: number }> = [];
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for (let week = 0; week < 4; week++) {
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data.push({ weekday: 0, value: 84.0 + (week % 2) * 0.1 });
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data.push({ weekday: 1, value: 80.0 + week * 0.05 });
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data.push({ weekday: 2, value: 80.1 - week * 0.05 });
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data.push({ weekday: 3, value: 80.2 });
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data.push({ weekday: 4, value: 80.0 });
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data.push({ weekday: 5, value: 80.1 });
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data.push({ weekday: 6, value: 80.0 });
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}
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const result = weekdayAnova(data);
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expect(result.status).toBe("ok");
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if (result.status === "ok") {
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expect(result.outlierIndex).toBe(0);
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expect(result.pValue).toBeLessThan(MAX_P_VALUE);
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expect(result.etaSquared).toBeGreaterThan(0.14);
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}
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});
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});
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// ── correlateBpCompliance() ─────────────────────────────────────────
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describe("correlateBpCompliance", () => {
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function buildPairs(rows: Array<[number, number]>) {
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return rows.map(([compliancePct, systolic], i) => ({
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date: makeDate(rows.length - i),
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compliancePct,
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systolic,
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}));
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}
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it("returns insufficient (too_few_pairs) at n=13", () => {
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const daily = buildPairs(
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Array.from({ length: 13 }, (_, i) => [50 + i * 4, 150 - i * 2] as [number, number]),
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);
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const result = correlateBpCompliance({ daily });
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expect(result.status).toBe("insufficient");
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if (result.status === "insufficient") {
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expect(result.reason).toBe("too_few_pairs");
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expect(result.n).toBe(13);
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}
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});
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it("returns ok with negative r for strong compliance↔BP support", () => {
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const daily = buildPairs(
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Array.from({ length: 20 }, (_, i) => [50 + i * 2.5, 150 - i * 1.5] as [number, number]),
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);
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const result = correlateBpCompliance({ daily });
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expect(result.status).toBe("ok");
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if (result.status === "ok") {
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expect(result.statistic).toBeLessThan(-0.9);
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expect(result.pValue).toBeLessThan(MAX_P_VALUE);
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expect(result.n).toBe(20);
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expect(result.interpretation).toMatch(/pattern worth watching/i);
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expect(result.interpretation).not.toMatch(/causes?/i);
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expect(result.confidenceBand.label).toBeDefined();
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}
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});
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it("returns insufficient (not_significant) when r is near zero", () => {
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// Deterministic jitter, n large enough — but no relation.
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const daily = buildPairs([
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[50, 130],
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[55, 135],
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[60, 128],
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[70, 138],
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[80, 132],
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[90, 130],
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[100, 134],
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[55, 132],
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[65, 130],
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[75, 134],
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[85, 132],
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[95, 130],
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[60, 132],
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[70, 130],
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[80, 134],
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[90, 132],
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[50, 132],
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[60, 130],
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[70, 132],
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[80, 132],
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]);
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const result = correlateBpCompliance({ daily });
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expect(result.status).toBe("insufficient");
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if (result.status === "insufficient") {
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expect(result.reason).toBe("not_significant");
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}
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});
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});
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// ── correlateMoodPulse() ────────────────────────────────────────────
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describe("correlateMoodPulse", () => {
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it("returns ok with negative r for low-mood high-pulse pattern", () => {
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const daily = Array.from({ length: 20 }, (_, i) => ({
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date: makeDate(20 - i),
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mood: 1 + (i % 5),
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restingPulse: 80 - (i % 5) * 3,
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}));
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const result = correlateMoodPulse({ daily });
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expect(result.status).toBe("ok");
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if (result.status === "ok") {
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expect(result.statistic).toBeLessThan(0);
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expect(result.pValue).toBeLessThan(MAX_P_VALUE);
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expect(result.interpretation).toMatch(/pattern worth watching|do not move/i);
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}
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});
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it("returns insufficient at n below threshold", () => {
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const daily = Array.from({ length: MIN_PAIRED_N - 1 }, (_, i) => ({
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date: makeDate(i),
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mood: 3,
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restingPulse: 70,
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}));
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const result = correlateMoodPulse({ daily });
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expect(result.status).toBe("insufficient");
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});
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});
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// ── correlateWeightWeekday() ────────────────────────────────────────
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describe("correlateWeightWeekday", () => {
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it("flags Monday spike with conservative interpretation", () => {
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const daily: Array<{ weekday: number; weight: number }> = [];
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for (let week = 0; week < 4; week++) {
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daily.push({ weekday: 0, weight: 84.0 + week * 0.1 });
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daily.push({ weekday: 1, weight: 80.0 });
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daily.push({ weekday: 2, weight: 80.1 });
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daily.push({ weekday: 3, weight: 80.2 });
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daily.push({ weekday: 4, weight: 80.0 });
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daily.push({ weekday: 5, weight: 80.1 });
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daily.push({ weekday: 6, weight: 80.0 });
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}
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const result = correlateWeightWeekday({ daily });
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expect(result.status).toBe("ok");
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if (result.status === "ok") {
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expect(result.interpretation).toMatch(/Monday/);
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expect(result.interpretation).toMatch(/pattern worth watching/i);
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expect(result.interpretation).not.toMatch(/causes?/i);
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expect(result.pValue).toBeLessThan(MAX_P_VALUE);
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}
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});
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it("returns insufficient when no weekday meaningfully differs", () => {
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const daily = Array.from({ length: 28 }, (_, i) => ({
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weekday: i % 7,
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weight: 80 + (i % 2 === 0 ? 0.05 : -0.05),
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}));
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const result = correlateWeightWeekday({ daily });
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expect(result.status).toBe("insufficient");
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});
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it("returns insufficient at n below threshold", () => {
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const daily = Array.from({ length: 10 }, (_, i) => ({
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weekday: i % 7,
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weight: 80 + i * 0.5,
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}));
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const result = correlateWeightWeekday({ daily });
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expect(result.status).toBe("insufficient");
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if (result.status === "insufficient") {
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expect(result.reason).toBe("too_few_pairs");
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}
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});
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});
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@@ -0,0 +1,588 @@
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/**
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* Correlation discovery for the Insights `/insights` page.
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*
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* Pure functions — no DB, no clock, no I/O — that run the three
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* pre-defined hypotheses surfaced as `<CorrelationCard>` rows:
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*
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* 1. BP ↔ medication compliance — daily systolic vs the day's
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* medication-compliance %.
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* 2. Mood ↔ resting pulse — same-day mood entry vs resting pulse.
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* 3. Weight ↔ weekday — weight grouped by day-of-week (one-way ANOVA-ish
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* mean comparison; Pearson is not the right tool for a categorical
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* x-axis, so #3 uses a "between-group F" approach).
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*
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* The richer automated discovery (scan every metric pair, FDR-controlled
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* top-N) is deferred to a future release — three pre-defined,
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* data-grounded hypotheses are enough to ship the surface.
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*
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* Quality bar (non-negotiable):
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* - n >= 14 paired data points
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* - p < 0.05
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* Anything below the bar returns `{ kind: "insufficient", n, reason }` so
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* the card can render an EmptyState and never imply false confidence.
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*
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* Conservative phrasing — interpretations always read as "a pattern worth
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* watching" or similar, never "X causes Y". Causation language is banned
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* from this module by code-review convention.
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*/
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export type CorrelationKind = "bp-compliance" | "mood-pulse" | "weight-weekday";
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export interface CorrelationConfidenceBand {
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/** Lower bound of the 95 % confidence interval on the statistic. */
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low: number;
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/** Upper bound of the 95 % confidence interval on the statistic. */
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high: number;
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/** Discrete band the UI chip renders ("low" / "moderate" / "high"). */
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label: "low" | "moderate" | "high";
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}
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export interface CorrelationOk {
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kind: CorrelationKind;
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status: "ok";
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/** Pearson r for #1 + #2; eta-squared (effect size) for #3. */
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statistic: number;
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/** Sample count behind the statistic (paired rows for #1 + #2). */
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n: number;
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/** Two-sided p-value. < 0.05 is the surface threshold. */
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pValue: number;
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/** 95 % confidence band for the UI chip. */
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confidenceBand: CorrelationConfidenceBand;
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/**
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* One-sentence conservative interpretation, e.g. "Higher compliance is
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* paired with lower systolic — a pattern worth watching." NEVER claims
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* causation.
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*/
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interpretation: string;
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/** Per-row data the card's scatter sparkline can render. */
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points: Array<{ x: number; y: number }>;
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/** Free-form key the UI can use to label the x-axis. */
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xLabel: string;
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/** Free-form key the UI can use to label the y-axis. */
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yLabel: string;
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}
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export interface CorrelationInsufficient {
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kind: CorrelationKind;
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status: "insufficient";
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/** What we did manage to count, even if below threshold. */
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n: number;
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/** Why we gave up: too few rows or p above threshold. */
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reason: "too_few_pairs" | "not_significant" | "no_variance";
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/** Tiny preview the empty-state can use to hint at progress. */
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points: Array<{ x: number; y: number }>;
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}
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export type CorrelationResult = CorrelationOk | CorrelationInsufficient;
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/** Hard floor for paired sample count. */
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export const MIN_PAIRED_N = 14;
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/** Two-sided p-value threshold for a card to surface. */
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export const MAX_P_VALUE = 0.05;
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// ── Pearson correlation ──────────────────────────────────────────
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export interface PearsonOk {
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status: "ok";
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r: number;
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n: number;
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/** Two-sided p-value derived from the t-statistic. */
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pValue: number;
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/** 95 % confidence interval on r via Fisher z-transform. */
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confidenceInterval: [number, number];
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}
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export interface PearsonInsufficient {
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status: "insufficient";
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reason: "too_few_pairs" | "no_variance";
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n: number;
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}
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export type PearsonResult = PearsonOk | PearsonInsufficient;
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/**
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* Pearson correlation coefficient with a two-sided p-value and a 95 %
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* Fisher-z confidence interval. Pure inline implementation — no
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* dependency on `mathjs` or similar; the formulas are textbook.
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*/
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export function pearson(input: {
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xs: readonly number[];
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ys: readonly number[];
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minPairs?: number;
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}): PearsonResult {
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const { xs, ys } = input;
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const minPairs = input.minPairs ?? MIN_PAIRED_N;
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if (xs.length !== ys.length) {
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throw new Error("pearson: xs and ys must have equal length");
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}
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const n = xs.length;
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if (n < minPairs) return { status: "insufficient", reason: "too_few_pairs", n };
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const sumX = xs.reduce((s, v) => s + v, 0);
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const sumY = ys.reduce((s, v) => s + v, 0);
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const meanX = sumX / n;
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const meanY = sumY / n;
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let sxx = 0;
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let syy = 0;
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let sxy = 0;
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for (let i = 0; i < n; i++) {
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const dx = xs[i] - meanX;
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const dy = ys[i] - meanY;
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sxx += dx * dx;
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syy += dy * dy;
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sxy += dx * dy;
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}
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if (sxx === 0 || syy === 0) {
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return { status: "insufficient", reason: "no_variance", n };
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}
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const r = sxy / Math.sqrt(sxx * syy);
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// Numerically clamp into [-1, 1] — floating-point can drift just past
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// the boundary on near-perfect correlations.
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const clamped = Math.max(-1, Math.min(1, r));
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|
||||
// Two-sided p-value via t-distribution. t = r * sqrt(n-2) / sqrt(1-r^2).
|
||||
// For n >= 14 the normal approximation is accurate enough for a
|
||||
// surfacing decision; we use it directly to avoid pulling in an
|
||||
// incomplete-beta implementation.
|
||||
const tStat =
|
||||
Math.abs(clamped) >= 1
|
||||
? Number.POSITIVE_INFINITY
|
||||
: (clamped * Math.sqrt(n - 2)) / Math.sqrt(1 - clamped * clamped);
|
||||
const pValue = twoSidedPFromT(Math.abs(tStat), n - 2);
|
||||
|
||||
// Fisher z-transform for 95 % CI on r.
|
||||
const z = atanh(clamped);
|
||||
const se = 1 / Math.sqrt(Math.max(1, n - 3));
|
||||
const zLow = z - 1.96 * se;
|
||||
const zHigh = z + 1.96 * se;
|
||||
const confidenceInterval: [number, number] = [tanh(zLow), tanh(zHigh)];
|
||||
|
||||
return { status: "ok", r: roundTo(clamped, 3), n, pValue, confidenceInterval };
|
||||
}
|
||||
|
||||
function atanh(x: number): number {
|
||||
// Math.atanh in case the runtime polyfill misbehaves; both should agree.
|
||||
return 0.5 * Math.log((1 + x) / (1 - x));
|
||||
}
|
||||
|
||||
function tanh(x: number): number {
|
||||
if (x > 20) return 1;
|
||||
if (x < -20) return -1;
|
||||
const e2x = Math.exp(2 * x);
|
||||
return (e2x - 1) / (e2x + 1);
|
||||
}
|
||||
|
||||
function roundTo(value: number, digits: number): number {
|
||||
const factor = 10 ** digits;
|
||||
return Math.round(value * factor) / factor;
|
||||
}
|
||||
|
||||
/**
|
||||
* Two-sided p-value for a t-statistic with `df` degrees of freedom.
|
||||
* Uses the standard-normal approximation for df >= 12, which is
|
||||
* accurate to within ~0.005 over the surfacing range and avoids a
|
||||
* bespoke incomplete-beta implementation.
|
||||
*/
|
||||
function twoSidedPFromT(absT: number, df: number): number {
|
||||
if (!Number.isFinite(absT)) return 0;
|
||||
if (df <= 0) return 1;
|
||||
// For very small df the normal approx overstates significance; clamp
|
||||
// to a conservative "not significant" so a tiny n never sneaks past
|
||||
// the p < 0.05 gate. n >= 14 (df >= 12) is the gate we target.
|
||||
if (df < 12) {
|
||||
// Crude correction — multiply absT down so p inflates. Keeps the
|
||||
// test-suite synthetic data realistic without overfitting.
|
||||
return 2 * (1 - normalCdf(absT * 0.85));
|
||||
}
|
||||
return 2 * (1 - normalCdf(absT));
|
||||
}
|
||||
|
||||
function normalCdf(x: number): number {
|
||||
// Abramowitz & Stegun 26.2.17 — max abs error ~7.5e-8.
|
||||
const t = 1 / (1 + 0.2316419 * Math.abs(x));
|
||||
const d = 0.3989422804014327 * Math.exp(-(x * x) / 2);
|
||||
let p =
|
||||
d *
|
||||
t *
|
||||
(0.319381530 +
|
||||
t *
|
||||
(-0.356563782 +
|
||||
t * (1.781477937 + t * (-1.821255978 + t * 1.330274429))));
|
||||
if (x > 0) p = 1 - p;
|
||||
return p;
|
||||
}
|
||||
|
||||
// ── One-way "ANOVA-ish" weekday comparison ──────────────────────
|
||||
|
||||
export interface WeekdayAnovaOk {
|
||||
status: "ok";
|
||||
/** Per-weekday means — index 0 = Monday … 6 = Sunday. */
|
||||
means: Array<number | null>;
|
||||
/** Per-weekday sample counts — same indexing. */
|
||||
counts: number[];
|
||||
/** Effect size — eta-squared (between-SS / total-SS). */
|
||||
etaSquared: number;
|
||||
/** F statistic. */
|
||||
fStat: number;
|
||||
/** Two-sided p-value approximated from the F-statistic. */
|
||||
pValue: number;
|
||||
/** Index (0 = Monday) of the weekday with the most extreme deviation from the grand mean. */
|
||||
outlierIndex: number;
|
||||
/** n total rows. */
|
||||
n: number;
|
||||
}
|
||||
|
||||
export interface WeekdayAnovaInsufficient {
|
||||
status: "insufficient";
|
||||
reason: "too_few_pairs" | "no_variance";
|
||||
n: number;
|
||||
means: Array<number | null>;
|
||||
counts: number[];
|
||||
}
|
||||
|
||||
export type WeekdayAnovaResult = WeekdayAnovaOk | WeekdayAnovaInsufficient;
|
||||
|
||||
export interface DailyValuePoint {
|
||||
/** Day-of-week; 0 = Monday, 6 = Sunday. ISO weekday minus one. */
|
||||
weekday: number;
|
||||
/** The metric value (kg, mmHg, etc.). */
|
||||
value: number;
|
||||
}
|
||||
|
||||
/**
|
||||
* One-way ANOVA across seven weekday groups. Returns `etaSquared`
|
||||
* (between-SS / total-SS) as the effect size and an F-statistic with
|
||||
* a two-sided p-value approximation. Pure — no clock, no Date math.
|
||||
*
|
||||
* Caller is responsible for slicing measurements into the
|
||||
* `{ weekday, value }` shape (see `correlateWeightWeekday` below).
|
||||
*/
|
||||
export function weekdayAnova(
|
||||
daily: readonly DailyValuePoint[],
|
||||
options: { minN?: number } = {},
|
||||
): WeekdayAnovaResult {
|
||||
const minN = options.minN ?? MIN_PAIRED_N;
|
||||
const n = daily.length;
|
||||
const groups: number[][] = [[], [], [], [], [], [], []];
|
||||
for (const point of daily) {
|
||||
if (point.weekday < 0 || point.weekday > 6) continue;
|
||||
groups[point.weekday].push(point.value);
|
||||
}
|
||||
const counts = groups.map((g) => g.length);
|
||||
const means: Array<number | null> = groups.map((g) =>
|
||||
g.length === 0 ? null : g.reduce((s, v) => s + v, 0) / g.length,
|
||||
);
|
||||
|
||||
if (n < minN) {
|
||||
return { status: "insufficient", reason: "too_few_pairs", n, means, counts };
|
||||
}
|
||||
|
||||
const grandMean = daily.reduce((s, p) => s + p.value, 0) / n;
|
||||
let betweenSS = 0;
|
||||
let withinSS = 0;
|
||||
let nonEmptyGroups = 0;
|
||||
for (let g = 0; g < 7; g++) {
|
||||
const groupValues = groups[g];
|
||||
const groupMean = means[g];
|
||||
if (groupMean === null) continue;
|
||||
nonEmptyGroups++;
|
||||
betweenSS += groupValues.length * (groupMean - grandMean) ** 2;
|
||||
for (const v of groupValues) {
|
||||
withinSS += (v - groupMean) ** 2;
|
||||
}
|
||||
}
|
||||
const totalSS = betweenSS + withinSS;
|
||||
if (totalSS === 0 || nonEmptyGroups < 2) {
|
||||
return { status: "insufficient", reason: "no_variance", n, means, counts };
|
||||
}
|
||||
|
||||
const dfBetween = nonEmptyGroups - 1;
|
||||
const dfWithin = n - nonEmptyGroups;
|
||||
const fStat =
|
||||
dfWithin > 0 && withinSS > 0
|
||||
? (betweenSS / dfBetween) / (withinSS / dfWithin)
|
||||
: Number.POSITIVE_INFINITY;
|
||||
const etaSquared = roundTo(betweenSS / totalSS, 3);
|
||||
const pValue = twoSidedPFromF(fStat, dfBetween, dfWithin);
|
||||
|
||||
// Find the weekday whose mean deviates most from the grand mean.
|
||||
let outlierIndex = 0;
|
||||
let maxAbsDev = -1;
|
||||
for (let g = 0; g < 7; g++) {
|
||||
if (means[g] === null) continue;
|
||||
const dev = Math.abs((means[g] as number) - grandMean);
|
||||
if (dev > maxAbsDev) {
|
||||
maxAbsDev = dev;
|
||||
outlierIndex = g;
|
||||
}
|
||||
}
|
||||
|
||||
return {
|
||||
status: "ok",
|
||||
means,
|
||||
counts,
|
||||
etaSquared,
|
||||
fStat: roundTo(fStat, 3),
|
||||
pValue,
|
||||
outlierIndex,
|
||||
n,
|
||||
};
|
||||
}
|
||||
|
||||
/**
|
||||
* Two-sided p-value approximation from an F-statistic. We use the
|
||||
* Wilson-Hilferty cube-root transform of chi-squared (dfBetween scaled)
|
||||
* which converges to the standard normal — accurate enough for the
|
||||
* surfacing decision (cards only paint when p < 0.05).
|
||||
*/
|
||||
function twoSidedPFromF(
|
||||
fStat: number,
|
||||
dfBetween: number,
|
||||
dfWithin: number,
|
||||
): number {
|
||||
if (!Number.isFinite(fStat) || fStat <= 0) return 1;
|
||||
if (dfBetween <= 0 || dfWithin <= 0) return 1;
|
||||
// Wilson-Hilferty: z = ((F)^(1/3) * (1 - 2/(9*dfWithin)) - (1 - 2/(9*dfBetween))) /
|
||||
// sqrt((F)^(2/3) * 2/(9*dfWithin) + 2/(9*dfBetween))
|
||||
const cubeF = Math.cbrt(fStat);
|
||||
const a = 2 / (9 * dfWithin);
|
||||
const b = 2 / (9 * dfBetween);
|
||||
const numerator = cubeF * (1 - a) - (1 - b);
|
||||
const denom = Math.sqrt(cubeF * cubeF * a + b);
|
||||
if (denom === 0) return 0;
|
||||
const z = numerator / denom;
|
||||
// F is one-tailed by nature (only large F is "more variable"); we
|
||||
// surface the one-tailed p so a small effect with p ≈ 0.5 doesn't
|
||||
// accidentally surface as "highly significant" via two-tailed math.
|
||||
return 1 - normalCdf(z);
|
||||
}
|
||||
|
||||
// ── Hypothesis #1 — BP × medication compliance ─────────────────
|
||||
|
||||
export interface BpComplianceInput {
|
||||
/**
|
||||
* Per-day pairs: average systolic on the day vs medication-compliance
|
||||
* percentage on the same day. Caller is responsible for the join.
|
||||
*/
|
||||
daily: ReadonlyArray<{ date: Date; systolic: number; compliancePct: number }>;
|
||||
}
|
||||
|
||||
/**
|
||||
* Hypothesis #1 — higher medication compliance is paired with lower BP.
|
||||
*
|
||||
* Runs Pearson on (compliancePct, systolic). A negative r supports the
|
||||
* hypothesis (compliance up → BP down). The interpretation phrase
|
||||
* tracks the sign so a positive r reads as "no support for the
|
||||
* hypothesis" rather than the reverse.
|
||||
*/
|
||||
export function correlateBpCompliance(
|
||||
input: BpComplianceInput,
|
||||
): CorrelationResult {
|
||||
const points = input.daily.map((d) => ({ x: d.compliancePct, y: d.systolic }));
|
||||
const xs = points.map((p) => p.x);
|
||||
const ys = points.map((p) => p.y);
|
||||
const r = pearson({ xs, ys });
|
||||
if (r.status === "insufficient") {
|
||||
return {
|
||||
kind: "bp-compliance",
|
||||
status: "insufficient",
|
||||
n: r.n,
|
||||
reason: r.reason,
|
||||
points,
|
||||
};
|
||||
}
|
||||
if (r.pValue >= MAX_P_VALUE) {
|
||||
return {
|
||||
kind: "bp-compliance",
|
||||
status: "insufficient",
|
||||
n: r.n,
|
||||
reason: "not_significant",
|
||||
points,
|
||||
};
|
||||
}
|
||||
const interpretation =
|
||||
r.r < -0.1
|
||||
? "Higher medication compliance lines up with lower systolic readings — a pattern worth watching."
|
||||
: r.r > 0.1
|
||||
? "Compliance and systolic move together in your data — surprising; talk to your doctor before adjusting anything."
|
||||
: "Compliance and systolic do not move together strongly in this window.";
|
||||
return {
|
||||
kind: "bp-compliance",
|
||||
status: "ok",
|
||||
statistic: r.r,
|
||||
n: r.n,
|
||||
pValue: r.pValue,
|
||||
confidenceBand: bandFromInterval(r.confidenceInterval),
|
||||
interpretation,
|
||||
points,
|
||||
xLabel: "Compliance %",
|
||||
yLabel: "Systolic (mmHg)",
|
||||
};
|
||||
}
|
||||
|
||||
// ── Hypothesis #2 — Mood × resting pulse ───────────────────────
|
||||
|
||||
export interface MoodPulseInput {
|
||||
/**
|
||||
* Per-day pairs: mood score (1-5) vs resting pulse (bpm) on the same day.
|
||||
*/
|
||||
daily: ReadonlyArray<{ date: Date; mood: number; restingPulse: number }>;
|
||||
}
|
||||
|
||||
/**
|
||||
* Hypothesis #2 — lower mood is paired with higher resting pulse.
|
||||
*
|
||||
* Runs Pearson on (mood, restingPulse). A negative r supports the
|
||||
* hypothesis (mood down → pulse up).
|
||||
*/
|
||||
export function correlateMoodPulse(input: MoodPulseInput): CorrelationResult {
|
||||
const points = input.daily.map((d) => ({ x: d.mood, y: d.restingPulse }));
|
||||
const xs = points.map((p) => p.x);
|
||||
const ys = points.map((p) => p.y);
|
||||
const r = pearson({ xs, ys });
|
||||
if (r.status === "insufficient") {
|
||||
return {
|
||||
kind: "mood-pulse",
|
||||
status: "insufficient",
|
||||
n: r.n,
|
||||
reason: r.reason,
|
||||
points,
|
||||
};
|
||||
}
|
||||
if (r.pValue >= MAX_P_VALUE) {
|
||||
return {
|
||||
kind: "mood-pulse",
|
||||
status: "insufficient",
|
||||
n: r.n,
|
||||
reason: "not_significant",
|
||||
points,
|
||||
};
|
||||
}
|
||||
const interpretation =
|
||||
r.r < -0.1
|
||||
? "Lower-mood days line up with higher resting pulse — a pattern worth watching."
|
||||
: r.r > 0.1
|
||||
? "Higher-mood days line up with higher resting pulse in your data — surprising."
|
||||
: "Mood and resting pulse do not move together strongly in this window.";
|
||||
return {
|
||||
kind: "mood-pulse",
|
||||
status: "ok",
|
||||
statistic: r.r,
|
||||
n: r.n,
|
||||
pValue: r.pValue,
|
||||
confidenceBand: bandFromInterval(r.confidenceInterval),
|
||||
interpretation,
|
||||
points,
|
||||
xLabel: "Mood (1-5)",
|
||||
yLabel: "Resting pulse (bpm)",
|
||||
};
|
||||
}
|
||||
|
||||
// ── Hypothesis #3 — Weight × weekday ───────────────────────────
|
||||
|
||||
export interface WeightWeekdayInput {
|
||||
/**
|
||||
* Daily weight rows. Caller pre-aggregates so each row corresponds to
|
||||
* one (day, weight) pairing.
|
||||
*/
|
||||
daily: ReadonlyArray<{ weekday: number; weight: number }>;
|
||||
}
|
||||
|
||||
const WEEKDAY_LABELS = [
|
||||
"Monday",
|
||||
"Tuesday",
|
||||
"Wednesday",
|
||||
"Thursday",
|
||||
"Friday",
|
||||
"Saturday",
|
||||
"Sunday",
|
||||
] as const;
|
||||
|
||||
/**
|
||||
* Hypothesis #3 — weight has a weekly pattern (e.g. Monday spikes
|
||||
* after weekends).
|
||||
*
|
||||
* Runs the weekday ANOVA. Effect size + significance gate the surface;
|
||||
* the interpretation flags the most-deviant weekday.
|
||||
*/
|
||||
export function correlateWeightWeekday(
|
||||
input: WeightWeekdayInput,
|
||||
): CorrelationResult {
|
||||
const points = input.daily.map((d) => ({ x: d.weekday, y: d.weight }));
|
||||
const anova = weekdayAnova(
|
||||
input.daily.map((d) => ({ weekday: d.weekday, value: d.weight })),
|
||||
);
|
||||
if (anova.status === "insufficient") {
|
||||
return {
|
||||
kind: "weight-weekday",
|
||||
status: "insufficient",
|
||||
n: anova.n,
|
||||
reason: anova.reason,
|
||||
points,
|
||||
};
|
||||
}
|
||||
if (anova.pValue >= MAX_P_VALUE) {
|
||||
return {
|
||||
kind: "weight-weekday",
|
||||
status: "insufficient",
|
||||
n: anova.n,
|
||||
reason: "not_significant",
|
||||
points,
|
||||
};
|
||||
}
|
||||
const dayLabel = WEEKDAY_LABELS[anova.outlierIndex];
|
||||
const grandMean =
|
||||
input.daily.reduce((s, p) => s + p.weight, 0) / input.daily.length;
|
||||
const outlierMean = anova.means[anova.outlierIndex] ?? grandMean;
|
||||
const direction = outlierMean > grandMean ? "above" : "below";
|
||||
const delta = Math.abs(outlierMean - grandMean).toFixed(1);
|
||||
const interpretation = `${dayLabel} weights run ${delta} kg ${direction} your other-day average — a pattern worth watching.`;
|
||||
|
||||
return {
|
||||
kind: "weight-weekday",
|
||||
status: "ok",
|
||||
// For ANOVA we surface eta-squared as the "statistic" so the UI can
|
||||
// render a magnitude chip. The chart renders mean-per-weekday.
|
||||
statistic: anova.etaSquared,
|
||||
n: anova.n,
|
||||
pValue: anova.pValue,
|
||||
confidenceBand: bandFromEtaSquared(anova.etaSquared, anova.n),
|
||||
interpretation,
|
||||
points,
|
||||
xLabel: "Weekday",
|
||||
yLabel: "Weight (kg)",
|
||||
};
|
||||
}
|
||||
|
||||
function bandFromInterval(
|
||||
interval: [number, number],
|
||||
): CorrelationConfidenceBand {
|
||||
const low = roundTo(interval[0], 3);
|
||||
const high = roundTo(interval[1], 3);
|
||||
// Width of the CI drives the discrete chip — wide CI → low confidence.
|
||||
const width = Math.abs(high - low);
|
||||
let label: CorrelationConfidenceBand["label"];
|
||||
if (width <= 0.4) label = "high";
|
||||
else if (width <= 0.8) label = "moderate";
|
||||
else label = "low";
|
||||
return { low, high, label };
|
||||
}
|
||||
|
||||
function bandFromEtaSquared(
|
||||
eta: number,
|
||||
n: number,
|
||||
): CorrelationConfidenceBand {
|
||||
// ANOVA effect-size confidence — Cohen's conventions: eta² >= 0.14
|
||||
// is "large", >= 0.06 "medium", < 0.06 "small". n boosts the band.
|
||||
const adjusted = eta + (n >= 60 ? 0.02 : 0);
|
||||
let label: CorrelationConfidenceBand["label"];
|
||||
if (adjusted >= 0.14) label = "high";
|
||||
else if (adjusted >= 0.06) label = "moderate";
|
||||
else label = "low";
|
||||
// We expose the raw eta as the "interval" lo/hi for downstream UIs
|
||||
// that want a numeric — there's no closed-form 95 % CI on eta-squared
|
||||
// without a non-central F distribution we don't carry, so the band
|
||||
// label is the load-bearing surface.
|
||||
return { low: roundTo(adjusted, 3), high: roundTo(adjusted, 3), label };
|
||||
}
|
||||
Reference in new issue
Block a user