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https://github.com/MBombeck/HealthLog.git
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feat(labs): list every marker from a server-side per-biomarker overview
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@@ -0,0 +1,36 @@
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import { NextRequest } from "next/server";
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import { apiHandler, requireRecordAuth } from "@/lib/api-handler";
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import { apiSuccess, returnAllZodIssues } from "@/lib/api-response";
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import { loadLabOverview } from "@/lib/labs/overview";
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import { annotate } from "@/lib/logging/context";
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import { labOverviewQuerySchema } from "@/lib/validations/labs";
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/**
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* `GET /api/labs/overview` — one entry per biomarker over the caller's whole
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* live lab history: the newest reading, the reading count and a short trend.
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* The Labs list renders from this instead of grouping a capped page of raw
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* rows, so a marker measured only long ago still has its row. Same read gate
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* as `GET /api/labs` (`requireRecordAuth("read", "labs")`).
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*/
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export const GET = apiHandler(async (request: NextRequest) => {
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const { user } = await requireRecordAuth("read", "labs");
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const parsed = labOverviewQuerySchema.safeParse(
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Object.fromEntries(request.nextUrl.searchParams),
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);
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if (!parsed.success) {
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annotate({
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action: { name: "labs.overview.validation-failed" },
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meta: { issue_count: parsed.error.issues.length },
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});
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return returnAllZodIssues(parsed.error, 422);
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}
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const markers = await loadLabOverview(user.id);
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annotate({
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action: { name: "labs.overview" },
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meta: { markers: markers.length },
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});
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return apiSuccess({ markers });
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});
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@@ -4,7 +4,7 @@ import { QueryClient, QueryClientProvider } from "@tanstack/react-query";
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import { I18nProvider } from "@/lib/i18n/context";
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import { queryKeys } from "@/lib/query-keys";
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import type { LabResultDto, LabResultListResponse } from "../types";
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import type { LabOverviewResponse, LabResultDto } from "../types";
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/**
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* Every row of the compact list is five grid cells from `lg` up. The range
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@@ -55,22 +55,29 @@ function renderList(results: LabResultDto[]) {
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const queryClient = new QueryClient({
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defaultOptions: { queries: { retry: false, staleTime: Infinity } },
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});
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const data: LabResultListResponse = {
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results,
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meta: { total: results.length, limit: 500, offset: 0 },
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};
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queryClient.setQueryData(
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queryKeys.labResultsList({
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biomarkerId: undefined,
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analyte: undefined,
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panel: undefined,
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from: undefined,
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to: undefined,
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page: 0,
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sortDir: "desc",
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// The overview the server would send for these readings: one marker per
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// biomarker (or lower-cased analyte), newest reading as `latest`.
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const byKey = new Map<string, LabResultDto[]>();
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for (const r of results) {
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const key = r.biomarkerId
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? `bm:${r.biomarkerId}`
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: `analyte:${r.analyte.toLowerCase()}`;
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byKey.set(key, [...(byKey.get(key) ?? []), r]);
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}
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const data: LabOverviewResponse = {
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markers: [...byKey.entries()].map(([key, readings]) => {
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const ordered = [...readings].sort(
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(a, b) => Date.parse(a.takenAt) - Date.parse(b.takenAt),
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);
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return {
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key,
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count: ordered.length,
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trend: ordered.map((r) => r.value),
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latest: ordered[ordered.length - 1],
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};
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}),
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data,
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);
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};
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queryClient.setQueryData(queryKeys.labResultsOverview(), data);
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return renderToStaticMarkup(
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<QueryClientProvider client={queryClient}>
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<I18nProvider initialLocale="en">
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@@ -26,57 +26,44 @@ import { useLabDate, useLabNumber } from "./use-lab-format";
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import { LabReferenceRangeBar } from "./lab-reference-range-bar";
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import { ReferenceRangeBadge } from "./reference-range-badge";
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import { SourceRangeNote } from "./source-range-note";
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import type { LabResultDto, LabResultListResponse } from "./types";
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import type {
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LabOverviewMarkerDto,
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LabOverviewResponse,
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LabResultDto,
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} from "./types";
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interface MarkerGroup {
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/** Stable group key: the biomarker id, or `analyte:<lower>` for legacy rows. */
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/** Stable group key: `bm:<biomarkerId>`, or `analyte:<lower>` for legacy rows. */
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key: string;
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/** Link target when the group is catalog-linked; null for legacy rows. */
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biomarkerId: string | null;
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analyte: string;
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panel: string | null;
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unit: string;
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readings: LabResultDto[];
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/** Every live reading of the marker, counted by the server. */
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count: number;
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/** Values of the newest readings, oldest first, for the sparkline. */
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trend: (number | null)[];
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latest: LabResultDto;
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}
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/**
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* Group readings by their linked biomarker (or, for legacy un-linked rows,
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* case-insensitively by analyte). A catalog-linked group deep-links to its
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* detail chart; legacy groups render inert until the backfill links them.
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* One group per marker, as the server resolved it over the whole history. A
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* catalog-linked group deep-links to its detail chart; legacy groups render
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* inert until the backfill links them. The server already orders by the
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* newest reading.
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*/
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function groupReadings(results: LabResultDto[]): MarkerGroup[] {
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const byKey = new Map<string, LabResultDto[]>();
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for (const r of results) {
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const key = r.biomarkerId
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? `bm:${r.biomarkerId}`
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: `analyte:${r.analyte.toLowerCase()}`;
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const bucket = byKey.get(key);
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if (bucket) bucket.push(r);
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else byKey.set(key, [r]);
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}
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const groups: MarkerGroup[] = [];
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for (const [key, readings] of byKey.entries()) {
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const ordered = [...readings].sort(
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(a, b) => new Date(a.takenAt).getTime() - new Date(b.takenAt).getTime(),
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);
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const latest = ordered[ordered.length - 1];
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groups.push({
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key,
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biomarkerId: latest.biomarkerId,
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analyte: latest.analyte,
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panel: latest.panel,
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unit: latest.unit,
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readings: ordered,
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latest,
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});
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}
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return groups.sort(
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(a, b) =>
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new Date(b.latest.takenAt).getTime() -
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new Date(a.latest.takenAt).getTime(),
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);
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function toGroups(markers: LabOverviewMarkerDto[]): MarkerGroup[] {
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return markers.map((marker) => ({
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key: marker.key,
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biomarkerId: marker.latest.biomarkerId,
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analyte: marker.latest.analyte,
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panel: marker.latest.panel,
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unit: marker.latest.unit,
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count: marker.count,
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trend: marker.trend,
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latest: marker.latest,
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}));
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}
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/**
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@@ -157,26 +144,17 @@ export function LabList({
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// (no catalog match) carry no subtitle rather than a fabricated one.
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// v1.24 — the per-marker description moved to the biomarker detail page
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// (beneath the heading); the overview rows no longer carry it.
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const listKey = queryKeys.labResultsList({
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biomarkerId: undefined,
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analyte: undefined,
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panel: undefined,
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from: undefined,
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to: undefined,
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page: 0,
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sortDir: "desc",
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});
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// One entry per biomarker over the whole history, grouped server-side: a
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// capped page of raw rows dropped every marker measured only long ago.
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const { data, isLoading, isError, refetch } = useQuery({
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queryKey: listKey,
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queryFn: () =>
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apiGet<LabResultListResponse>("/api/labs?limit=500&sortDir=desc"),
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queryKey: queryKeys.labResultsOverview(),
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queryFn: () => apiGet<LabOverviewResponse>("/api/labs/overview"),
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});
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const groups = useMemo(() => {
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const base = groupReadings(data?.results ?? []);
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// v1.18.6 (MOD-04) — honour the user's Labs sort choice. `groupReadings`
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// already returns most-recent-first; `recentAsc` reverses, the alpha
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const base = toGroups(data?.markers ?? []);
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// v1.18.6 (MOD-04) — honour the user's Labs sort choice. The server
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// order is most-recent-first; `recentAsc` reverses, the alpha
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// options sort by analyte name (#43), and `manual` applies the persisted
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// biomarker order (legacy un-linked groups, which carry no biomarkerId,
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// sort after the ordered block).
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@@ -195,14 +173,7 @@ export function LabList({
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return applyOrder(base, prefs.order, (g) => g.biomarkerId ?? g.key);
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}
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return base;
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}, [data?.results, prefs.sortDir, prefs.order]);
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// The list caps at 500 rows server-side (the `limit` ceiling). Surface a
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// calm "showing latest N of M" hint when the cap truncates so the count is
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// never silently wrong — proper cursor paging is a later iteration.
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const total = data?.meta?.total ?? 0;
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const shown = data?.results?.length ?? 0;
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const truncated = total > shown;
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}, [data?.markers, prefs.sortDir, prefs.order]);
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const listEmpty = !isLoading && !isError && groups.length === 0;
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useEffect(() => {
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@@ -266,11 +237,6 @@ export function LabList({
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// branch above carries `lab-list-loading` instead, so the marker
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// cannot stand for a silhouette.
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<div data-slot="lab-list" className="space-y-3">
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{truncated ? (
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<p className="text-muted-foreground text-xs">
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{t("labs.showingLatestOf", { shown, total })}
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</p>
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) : null}
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{/* `@container` makes the columns follow the width the list has, not the
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window's: below `@5xl` (64rem of card) the row is the `lg` table it
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always was (the two tiers exclude each other, so the result does not
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@@ -319,7 +285,7 @@ export function LabList({
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<LabRangeBarSlot reading={group.latest} />
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<div className={cn("w-[72px]", MOBILE_CELL.trend)}>
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<LabTrendSparkline
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values={group.readings.map((reading) => reading.value)}
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values={group.trend}
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referenceLow={group.latest.referenceLow}
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referenceHigh={group.latest.referenceHigh}
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/>
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@@ -343,7 +309,7 @@ export function LabList({
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<LabRangeBarSlot reading={group.latest} />
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<div className={cn("w-[72px]", MOBILE_CELL.trend)}>
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<LabTrendSparkline
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values={group.readings.map((reading) => reading.value)}
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values={group.trend}
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referenceLow={group.latest.referenceLow}
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referenceHigh={group.latest.referenceHigh}
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/>
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@@ -380,13 +346,6 @@ export function LabList({
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groups.length > 1 && "sm:grid-cols-2",
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)}
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>
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{truncated ? (
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<li className="sm:col-span-2">
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<p className="text-muted-foreground text-xs">
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{t("labs.showingLatestOf", { shown, total })}
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</p>
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</li>
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) : null}
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{groups.map((group) => {
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return (
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<li key={group.key} className="contents">
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@@ -432,10 +391,10 @@ export function LabList({
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{labDate(group.latest.takenAt)}
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</span>
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<LabConvertedNote reading={group.latest} />
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{group.readings.length > 1 ? (
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{group.count > 1 ? (
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<span className="text-xs">
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{t("labs.readingsCount", {
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count: group.readings.length,
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count: group.count,
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})}
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</span>
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) : null}
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@@ -447,7 +406,7 @@ export function LabList({
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/>
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</div>
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<LabTrendSparkline
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values={group.readings.map((reading) => reading.value)}
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values={group.trend}
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referenceLow={group.latest.referenceLow}
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referenceHigh={group.latest.referenceHigh}
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/>
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@@ -65,6 +65,21 @@ export interface LabResultListResponse {
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meta: { total: number; limit: number; offset: number };
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}
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/** One biomarker in `GET /api/labs/overview`. */
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export interface LabOverviewMarkerDto {
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/** `bm:<biomarkerId>`, or `analyte:<lower-cased name>` for a legacy row. */
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key: string;
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/** Every live reading of the marker. */
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count: number;
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/** Values of the newest readings, oldest first; null for a qualitative one. */
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trend: (number | null)[];
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latest: LabResultDto;
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}
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export interface LabOverviewResponse {
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markers: LabOverviewMarkerDto[];
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}
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/** A user-scoped Biomarker catalog entry as the API serialises it. */
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export interface BiomarkerDto {
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id: string;
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@@ -0,0 +1,131 @@
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/**
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* Per-marker overview of an account's lab history (`GET /api/labs/overview`).
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*
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* The Labs list shows one row per biomarker: its newest reading, how many
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* readings it has, and a small trend. It used to build that by fetching the
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* newest 500 raw rows and grouping them in the browser, so on a long history
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* every marker whose readings all lay beyond the 500th row vanished from the
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* list without a word. The grouping now happens here, over every live row, so
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* the answer does not depend on how many readings the other markers have.
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*
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* Grouping matches what the list always did: by the linked biomarker, or for a
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* legacy unlinked row case-insensitively by its analyte name.
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*/
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import { prisma } from "@/lib/db";
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import { serialiseLabResult } from "@/lib/labs/serialise";
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/**
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* Readings per marker that feed the trend sparkline, newest kept. The
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* sparkline is a 72px glyph; more points than this only overlap. The count
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* beside it is the full count, not this cap.
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*/
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export const LAB_OVERVIEW_TREND_POINTS = 50;
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export interface LabOverviewMarker {
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/** `bm:<biomarkerId>`, or `analyte:<lower-cased name>` for a legacy row. */
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key: string;
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/** Every live reading of this marker. */
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count: number;
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/** Values of the newest readings, oldest first; null for a qualitative one. */
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trend: (number | null)[];
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/** The newest reading, as the list endpoint serialises a row. */
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latest: ReturnType<typeof serialiseLabResult>;
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}
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/**
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* One window-function read ranks every live row inside its marker, keeps the
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* newest `LAB_OVERVIEW_TREND_POINTS` of each, and a second read loads the
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* newest row per marker with its biomarker so it serialises exactly like a
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* list row. Markers come back newest reading first.
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*/
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export async function loadLabOverview(
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userId: string,
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): Promise<LabOverviewMarker[]> {
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// Parameter-bound throughout. `id` breaks a `taken_at` tie the same way the
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// list endpoint's order does, so "newest" means the same row on both.
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const ranked = await prisma.$queryRaw<
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Array<{
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id: string;
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grp: string;
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value: number | null;
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rn: number;
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n: number;
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}>
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>`
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SELECT r."id", r."grp", r."value", r."rn"::int AS "rn", r."n"::int AS "n"
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FROM (
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SELECT g."id", g."grp", g."value",
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row_number() OVER (
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PARTITION BY g."grp" ORDER BY g."taken_at" DESC, g."id" DESC
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) AS "rn",
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count(*) OVER (PARTITION BY g."grp") AS "n"
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FROM (
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SELECT l."id", l."value", l."taken_at",
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CASE
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WHEN l."biomarker_id" IS NOT NULL THEN 'bm:' || l."biomarker_id"
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ELSE 'analyte:' || lower(l."analyte")
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END AS "grp"
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FROM "lab_results" l
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WHERE l."user_id" = ${userId} AND l."deleted_at" IS NULL
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) g
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) r
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WHERE r."rn" <= ${LAB_OVERVIEW_TREND_POINTS}
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`;
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if (ranked.length === 0) return [];
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const groups = new Map<
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string,
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{
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latestId: string | null;
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count: number;
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points: Array<[number, number | null]>;
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}
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>();
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for (const row of ranked) {
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let group = groups.get(row.grp);
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if (!group) {
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group = { latestId: null, count: row.n, points: [] };
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groups.set(row.grp, group);
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}
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if (row.rn === 1) group.latestId = row.id;
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group.points.push([row.rn, row.value]);
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}
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const latestIds = [...groups.values()]
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.map((g) => g.latestId)
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.filter((id): id is string => id !== null);
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const rows = await prisma.labResult.findMany({
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where: { userId, id: { in: latestIds } },
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include: {
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biomarker: {
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select: {
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id: true,
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name: true,
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unit: true,
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lowerBound: true,
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upperBound: true,
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panel: true,
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},
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},
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},
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});
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const byId = new Map(rows.map((row) => [row.id, row]));
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const markers: LabOverviewMarker[] = [];
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for (const [key, group] of groups) {
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const row = group.latestId ? byId.get(group.latestId) : undefined;
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// Deleted between the two reads: the marker is gone, not half-shown.
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if (!row) continue;
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markers.push({
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key,
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count: group.count,
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trend: group.points.sort((a, b) => b[0] - a[0]).map(([, value]) => value),
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latest: serialiseLabResult(row, row.biomarker ?? null),
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});
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}
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||||
return markers.sort((a, b) => {
|
||||
const byTime = Date.parse(b.latest.takenAt) - Date.parse(a.latest.takenAt);
|
||||
if (byTime !== 0) return byTime;
|
||||
return a.latest.id < b.latest.id ? 1 : a.latest.id > b.latest.id ? -1 : 0;
|
||||
});
|
||||
}
|
||||
@@ -12,6 +12,7 @@ import { z } from "zod/v4";
|
||||
|
||||
import {
|
||||
createLabResultSchema,
|
||||
labOverviewQuerySchema,
|
||||
listLabResultsSchema,
|
||||
updateLabResultSchema,
|
||||
} from "@/lib/validations/labs";
|
||||
@@ -116,6 +117,29 @@ const listResponse = z
|
||||
})
|
||||
.meta({ id: "ListLabResultsResponse" });
|
||||
|
||||
const labOverviewQuery = labOverviewQuerySchema.meta({
|
||||
id: "LabOverviewQuery",
|
||||
description:
|
||||
"The overview takes no query parameters; it always covers the whole live history. An unknown parameter is refused with 422.",
|
||||
});
|
||||
|
||||
const labOverviewMarker = z
|
||||
.object({
|
||||
key: z.string(),
|
||||
count: z.number().int(),
|
||||
trend: z.array(z.number().nullable()),
|
||||
latest: labResultRow,
|
||||
})
|
||||
.meta({
|
||||
id: "LabOverviewMarker",
|
||||
description:
|
||||
"One biomarker in the caller's lab history. `key` is `bm:<biomarkerId>` for a catalog-linked marker or `analyte:<lower-cased name>` for a legacy unlinked one. `count` is every live reading of the marker. `trend` holds the values of its newest readings (at most 50), oldest first, null for a qualitative reading. `latest` is the newest reading, serialised exactly like a `GET /api/labs` row.",
|
||||
});
|
||||
|
||||
const labOverviewResponse = z
|
||||
.object({ markers: z.array(labOverviewMarker) })
|
||||
.meta({ id: "LabOverviewResponse" });
|
||||
|
||||
const notFound = {
|
||||
"404": {
|
||||
description: "Lab result not found (or owned by another user).",
|
||||
@@ -175,6 +199,27 @@ export const labsPaths: NonNullable<ZodOpenApiObject["paths"]> = {
|
||||
},
|
||||
},
|
||||
},
|
||||
"/api/labs/overview": {
|
||||
get: {
|
||||
tags: ["Labs"],
|
||||
summary: "Per-marker overview of the caller's lab history",
|
||||
description:
|
||||
"One entry per biomarker over every live lab result, newest reading first: the newest reading, the reading count and a short trend. Unlike `GET /api/labs` it is not paged, so a marker measured only long ago is never cut off by a page size.",
|
||||
requestParams: { query: labOverviewQuery },
|
||||
responses: {
|
||||
...recordRefusal(),
|
||||
"200": {
|
||||
description: "Lab overview.",
|
||||
content: {
|
||||
"application/json": {
|
||||
schema: dataEnvelope(labOverviewResponse, "LabOverviewEnvelope"),
|
||||
},
|
||||
},
|
||||
},
|
||||
...stdResponses,
|
||||
},
|
||||
},
|
||||
},
|
||||
"/api/labs/{id}": {
|
||||
get: {
|
||||
tags: ["Labs"],
|
||||
|
||||
@@ -29,6 +29,11 @@ export const labKeys = {
|
||||
params.sortDir,
|
||||
] as const,
|
||||
|
||||
// The Labs list: one entry per biomarker over the whole history
|
||||
// (`GET /api/labs/overview`). The `lab-results` prefix lets every result
|
||||
// mutation's `labResults()` invalidation evict it.
|
||||
labResultsOverview: () => ["lab-results", "overview"] as const,
|
||||
|
||||
// `/labs?analyte=<name>` (MCP deep links): the newest reading stored under
|
||||
// that exact analyte name, one row, to find its marker's page. Its own key
|
||||
// because the page size differs from every list read; the `lab-results`
|
||||
|
||||
@@ -306,6 +306,13 @@ export const listLabResultsSchema = z.object({
|
||||
|
||||
export type ListLabResultsInput = z.infer<typeof listLabResultsSchema>;
|
||||
|
||||
/**
|
||||
* The per-marker overview takes no parameters: it always covers the whole
|
||||
* live history. Strict, so a stray `limit` is refused rather than silently
|
||||
* ignored by a caller expecting it to cap something.
|
||||
*/
|
||||
export const labOverviewQuerySchema = z.object({}).strict();
|
||||
|
||||
/**
|
||||
* Reference-range classification lives in `@/lib/labs/reference-range` so the
|
||||
* API response, the doctor-report PDF, and the lab list card all share one
|
||||
|
||||
Reference in new issue
Block a user