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fix: harden pnpm supply chain and runtime image (#572)
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@@ -84,9 +84,9 @@ pnpm dlx tsx scripts/restore-backup.ts \
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/tmp/restored.json
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```
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The production standalone image strips `tsx`, so a bare
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`pnpm tsx scripts/...` fails inside the container — always invoke
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one-shot scripts via `pnpm dlx tsx`.
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Run this command from a source checkout with the production backup variables
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exported. The script imports the full application dependency graph, which the
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minimal production image does not expose as an operator scripting environment.
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The script downloads the object, decrypts it, and writes the JSON dump
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to disk. Importing the JSON back into a HealthLog instance is left to
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+14
-15
@@ -46,24 +46,23 @@ metadata (`medication_schedules`):
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Always. The default mode only reports and never mutates:
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```bash
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# inside the app container (or any checkout) — DATABASE_URL must point
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# at the target database
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pnpm dlx --package pg --package tsx tsx scripts/repair-intake-anomalies.ts
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# inside the production app container — DATABASE_URL is inherited
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healthlog-tsx scripts/repair-intake-anomalies.ts
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# scoped to one account
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pnpm dlx --package pg --package tsx tsx scripts/repair-intake-anomalies.ts --user <userId>
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healthlog-tsx scripts/repair-intake-anomalies.ts --user <userId>
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# source-checkout equivalent
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pnpm dlx --package pg --package tsx tsx scripts/repair-intake-anomalies.ts
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```
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The script is self-contained: its only import is `pg` and it reads
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`DATABASE_URL` straight from the environment (no dotenv, no `@/` path
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alias, no `src/` imports). That matters in the production container —
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the standalone image ships no project `node_modules`, so the previous
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revision died there with `Cannot find module 'dotenv/config'`. Inside
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the image `pg` resolves via `NODE_PATH=/opt/pg-boss/node_modules`; in a
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checkout it resolves from the project `node_modules`; the
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`--package pg --package tsx` pins cover any environment with neither.
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Use `pnpm dlx`, not bare `pnpm tsx` — the standalone image also strips
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`tsx`.
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alias, no `src/` imports). The production image provides the pinned
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`healthlog-tsx` launcher and resolves `pg` from its standalone runtime tree
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without retaining a package manager. In a source checkout, `pg` resolves from
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the project `node_modules`; `pnpm dlx --package pg --package tsx ...` also
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works in an environment where neither dependency is installed.
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The dry-run prints every duplicate group (which row would be kept, which
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would be tombstoned), a table of implausible rows (id, medication,
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@@ -74,7 +73,7 @@ would write), and a table of stale-anchor pending rows.
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## Applying the fix
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```bash
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pnpm dlx --package pg --package tsx tsx scripts/repair-intake-anomalies.ts --fix
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healthlog-tsx scripts/repair-intake-anomalies.ts --fix
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```
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`--fix` does five things:
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@@ -92,7 +91,7 @@ pnpm dlx --package pg --package tsx tsx scripts/repair-intake-anomalies.ts --fix
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in explicitly:
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```bash
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pnpm dlx --package pg --package tsx tsx scripts/repair-intake-anomalies.ts --fix --tombstone-implausible
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healthlog-tsx scripts/repair-intake-anomalies.ts --fix --tombstone-implausible
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```
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`--tombstone-implausible` is refused without `--fix`.
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@@ -139,7 +138,7 @@ slot anchors:
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The default run only **reports** the proposals. Apply them explicitly:
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```bash
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pnpm dlx --package pg --package tsx tsx scripts/repair-intake-anomalies.ts --backfill-eras
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healthlog-tsx scripts/repair-intake-anomalies.ts --backfill-eras
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```
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Review the dry-run table first — the inference is a heuristic. A wrongly
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